View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9795A_low_134 (Length: 293)

Name: NF9795A_low_134
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9795A_low_134
NF9795A_low_134
[»] chr1 (1 HSPs)
chr1 (6-293)||(39991701-39991987)


Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 6 - 293
Target Start/End: Original strand, 39991701 - 39991987
Alignment:
Q  6 cgctatgaagaatagacagacacaacaccaacaccaacatgtaaacattggtaacaatttgaggaaatttaattggttgaaaatgatcaaatgtgttggt 105  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  39991701 cgctatgaagaatagacagacacaacaccgacaccaacatgtaaacattggtaacaatttgaggaaatttaattggttgaaaatgat-aaatgtgttggt 39991799  T
Q  106 gtccgacatcaacatctattggacaccagacatacattcgatctgcagtactgcatatcaaatgtgctctagcatcaaataagggattaagtttagaaaa 205  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39991800 gtccgacatcgacatctattggacaccagacatacattcgatctgcagtactgcatatcaaatgtgctctagcatcaaataagggattaagtttagaaaa 39991899  T
Q  206 cattatgtcatatcctcaaatatctctcnnnnnnnnntagaaaagttcaagcttcaaccaattttgcacaagtagttccgacttctga 293  Q
    ||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39991900 cattatgtcatatcctcaaatatctctcaaaaaaaaatagaaaagttcaagcttcaaccaattttgcacaagtagttccgacttctga 39991987  T

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