View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_14 (Length: 439)
Name: NF9795A_low_14
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 157; Significance: 3e-83; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 274 - 434
Target Start/End: Complemental strand, 31069397 - 31069237
Alignment:
| Q |
274 |
ctattatcttcttatttatattaacgaaatgtgttgagatgaatcttgtgatattccttgaccatttttggaagaactgaagcaatttctttcattttgt |
373 |
Q |
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| T |
31069397 |
ctattatcttcttatttatattaacgaaatgtgttgagatgaatcttgtgatattccttgaccatttttggaagaactgaagcaatttctttcattttgt |
31069298 |
T |
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| Q |
374 |
cttcggtgttttctatgaaacttgaatcgatattggtgaaatcatcttgatgggtgattgt |
434 |
Q |
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| T |
31069297 |
cttcggtgttttctatgaaacttgaatcgatattggtgaaatcatcttgatgggtgtttgt |
31069237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 31069529 - 31069460
Alignment:
| Q |
142 |
agagacacaagtgaagaatagggggaatggttctgaagcttaacatcaccttgctgaaggaagaagacat |
211 |
Q |
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| T |
31069529 |
agagacacaagtgaagaatagggggaatggttttgaagcttaacatcaccttgctgaaggaagaagacat |
31069460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 31069661 - 31069596
Alignment:
| Q |
10 |
attcttgagttctaccgtcatttctcttcccacaaaatctttcaagtagcagaagaacaacttcat |
75 |
Q |
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| T |
31069661 |
attcttgagttctaccgtcatttctcttcccgcaaaatctttcaagtagcagaagaacaacttcat |
31069596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 37614398 - 37614334
Alignment:
| Q |
11 |
ttcttgagttctaccgtcatttctcttcccacaaaatctttcaagtagcagaagaacaacttcat |
75 |
Q |
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| T |
37614398 |
ttcttgagttcaaccgtcacttctcttcccaccaaatctttgaagtacgagaagaacagcttcat |
37614334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 42440506 - 42440446
Alignment:
| Q |
11 |
ttcttgagttctaccgtcatttctcttcccacaaaatctttcaagtagcagaagaacaact |
71 |
Q |
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| T |
42440506 |
ttcttgagttctaccgtaacttctcttcccaccaaatctttgaagtatgagaagaacaact |
42440446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 310 - 428
Target Start/End: Original strand, 11592990 - 11593109
Alignment:
| Q |
310 |
agatgaatcttgtgatattccttgacc-atttttggaagaactgaagcaatttctttcattttgtcttcggtgttttctatgaaacttgaatcgatattg |
408 |
Q |
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| T |
11592990 |
agatgcatcttgtgaaattccttgacccatgtttggaagaacagaagcagcttctttgattctgtctttggtgttttctatgaaaccagaatccatgttg |
11593089 |
T |
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| Q |
409 |
gtgaaatcatcttgatgggt |
428 |
Q |
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| T |
11593090 |
gtgtaatcttgttgatgggt |
11593109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 310 - 428
Target Start/End: Complemental strand, 11645129 - 11645010
Alignment:
| Q |
310 |
agatgaatcttgtgatattccttgacc-atttttggaagaactgaagcaatttctttcattttgtcttcggtgttttctatgaaacttgaatcgatattg |
408 |
Q |
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| T |
11645129 |
agatgcatcttgtgaaattccttgacccatgtttggaagaacagaagcagcttctttgattctgtctttggtgttttctatgaaaccagaatccatgttg |
11645030 |
T |
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| Q |
409 |
gtgaaatcatcttgatgggt |
428 |
Q |
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| T |
11645029 |
gtgtaatcttgttgatgggt |
11645010 |
T |
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