View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9795A_low_140 (Length: 291)

Name: NF9795A_low_140
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9795A_low_140
NF9795A_low_140
[»] chr3 (1 HSPs)
chr3 (10-291)||(44853287-44853557)


Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 10 - 291
Target Start/End: Complemental strand, 44853557 - 44853287
Alignment:
Q  10 ccaaagacgagatcgaatatggaccaaaatgatttgttataaacgcgttaaaataaaatcgacaggcctgctaaatccaatatacgcaacccggcccatt 109  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  44853557 ccaaagacgagatcgaatatggaccaaaataattttttataaacgcgttaaaataaaatcgacaggcctgctaaatccaatatacgcaacccgacccatt 44853458  T
Q  110 gtaaactacatgattcgattctaaccctagaaaccacggcaccaacggcgcggataaatatcattttcctttttatcttttaccgnnnnnnntaatgata 209  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||        ||||||||    
T  44853457 gtaaactacatgactcgattctaaccctagaaaccacggcaccaacggcgcg-----------ttttcctttttatcttttacccaaaaaaataatgata 44853369  T
Q  210 aaataccattttctttttcatcttttaccacaaaaatcgtactataggacaaaatattaaatcagatttgaacaaaatttga 291  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44853368 aaataccattttctttttcatcttttaccataaaaatcgtactataggacaaaatattaaatcagatttgaacaaaatttga 44853287  T

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