View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_155 (Length: 282)
Name: NF9795A_low_155
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_155 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 10 - 282
Target Start/End: Original strand, 36125241 - 36125513
Alignment:
| Q |
10 |
agatgaagatttgaacttcgttacgaacgaaagggttgagtttgatttgcaggacttgttaagggcctcagctgaggttttgggaagtggaagttttgga |
109 |
Q |
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| T |
36125241 |
agatgaagatttgaacttcgttacgaacgaaagggttgagtttgatttgcaggacttgttaagggcctcagcagaggttttgggaagtggaagttttgga |
36125340 |
T |
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| Q |
110 |
tccactcacaaggctatggtattgacaggaccagttgttgtagtgaaaagatttaagcacatgaacaaagttggcaaaaaagagttctatgatcatatga |
209 |
Q |
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| T |
36125341 |
tccacttacaaggctatggtattgacaggaccagttgttgtagtgaaaagatttaagcacatgaacaaagttggcaaaaaagagttctatgatcatatga |
36125440 |
T |
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| Q |
210 |
gaaggcttggaaggttgacacatcctaatctactccctctagttgcattctattatggaaaagatgagaagct |
282 |
Q |
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| T |
36125441 |
gaaggcttggaaggttgacacatcctaatctactccctctagttgcattctattatggaaaagatgagaagct |
36125513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 282
Target Start/End: Original strand, 42509247 - 42509377
Alignment:
| Q |
152 |
gtgaaaagatttaagcacatgaacaaagttggcaaaaaagagttctatgatcatatgagaaggcttggaaggttgacacatcctaatctactccctctag |
251 |
Q |
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| T |
42509247 |
gtgaagaggtttaagcaaatgaacaatgtagggaaggaagagtttcaagagcatatgagaaggattggaaggttgaaccatcctaatttgattcctcttg |
42509346 |
T |
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| Q |
252 |
ttgcattctattatggaaaagatgagaagct |
282 |
Q |
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| T |
42509347 |
ttgcttactattatagaaaagaagagaagct |
42509377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 71 - 261
Target Start/End: Original strand, 1254857 - 1255047
Alignment:
| Q |
71 |
agggcctcagctgaggttttgggaagtggaagttttggatccactcacaaggctatggtattgacaggaccagttgttgtagtgaaaagatttaagcaca |
170 |
Q |
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| T |
1254857 |
agggcttcagctgaagtgcttggaagtggaagttttggatcaacttataaggcaatagttttgaatggaccaactgtggtggttaagagatttaggcaca |
1254956 |
T |
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| Q |
171 |
tgaacaaagttggcaaaaaagagttctatgatcatatgagaaggcttggaaggttgacacatcctaatctactccctctagttgcattcta |
261 |
Q |
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| T |
1254957 |
tgaataatgttggtaaacaagagttttttgaacacatgaaaaagcttggaagtttgacacatcctaatctacttcctcttattgcattcta |
1255047 |
T |
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