View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_16 (Length: 437)
Name: NF9795A_low_16
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 21 - 434
Target Start/End: Complemental strand, 2842935 - 2842522
Alignment:
| Q |
21 |
atcatcaatggaaatggaaatgagacaatacgagaggttaattgaagaaagagtttcttatgatgaagaagagatgaatattatgcaagagattcttata |
120 |
Q |
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| T |
2842935 |
atcatcaatggaaatggaaatgagacaatacgagaggttaattgaagaaagagtttcttatgatgaagaagagatgaatattatgcaagagattcttata |
2842836 |
T |
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| Q |
121 |
agaagggaaagggagaatcnnnnnnnggaaaaggaacttgaaacttataggcaaatgagtttgacagaaagttgcgagttgcattcgaagtcagcagagg |
220 |
Q |
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| T |
2842835 |
agaagggaaagggaaaatctttttttggaaaaggaacttgaaacttttaggcaaatgagtttgacagaaagttgcgagttgcattcgaagtcagcagagg |
2842736 |
T |
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| Q |
221 |
tgcggcttagtgaatggaaacgaagctcgccactttcatttgaaacatgtgatgatccatcacagatcgaaagtactgtacctattgttaagcaagattg |
320 |
Q |
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| T |
2842735 |
tgcggcttagtgaatggaaacgaagctcgccactttcatttgaaacatgtgatgatccatcacagatcgaaagtactgtacttattgttaagcaagattg |
2842636 |
T |
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| Q |
321 |
tacgaataatacagaacatgaagagttggataaaaacactgaatacaaggatcgagcatgtgatgatttgcatagctccttttatgatactgagtctgat |
420 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2842635 |
taccaataatacagaacatgaagagttggataaaaacactgaatacaaggatcgagcatgtgatgatttgcatagctccttttatgatactgagtctgat |
2842536 |
T |
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| Q |
421 |
gttcttgatgtcca |
434 |
Q |
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| T |
2842535 |
gttcttgatgtcca |
2842522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 25 - 172
Target Start/End: Complemental strand, 2838830 - 2838683
Alignment:
| Q |
25 |
tcaatggaaatggaaatgagacaatacgagaggttaattgaagaaagagtttcttatgatgaagaagagatgaatattatgcaagagattcttataagaa |
124 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2838830 |
tcaatggaaatggaaatgagacaatatgagaggttaattgaagaaagagctgcttatgatgaagaagagatgaatattatgcaagagattcttataagaa |
2838731 |
T |
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| Q |
125 |
gggaaagggagaatcnnnnnnnggaaaaggaacttgaaacttataggc |
172 |
Q |
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| T |
2838730 |
gggaaaaggagaatctctttttggaaaaggaacttgaaagttataggc |
2838683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 340 - 430
Target Start/End: Complemental strand, 2838590 - 2838500
Alignment:
| Q |
340 |
gaagagttggataaaaacactgaatacaaggatcgagcatgtgatgatttgcatagctccttttatgatactgagtctgatgttcttgatg |
430 |
Q |
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| T |
2838590 |
gaagaggtggaggaaaacagtcaacacaaggatcaagcgtgcaatgatatgcatagatccttttatgatactgagtctgatgttcttgatg |
2838500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 285
Target Start/End: Complemental strand, 2838679 - 2838645
Alignment:
| Q |
251 |
cactttcatttgaaacatgtgatgatccatcacag |
285 |
Q |
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| T |
2838679 |
cactttcatttgaaacttgtgatgatccatcacag |
2838645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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