View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_167 (Length: 276)
Name: NF9795A_low_167
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_167 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 12 - 276
Target Start/End: Original strand, 47068476 - 47068740
Alignment:
| Q |
12 |
agagactagaaaaagtggtggaagaaggtgaaaaggaatttcaagcagaagtgagatccattgggaaaacccaccacaggaacctagttagattgctcgg |
111 |
Q |
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| T |
47068476 |
agagactagaaaaagtggtggaagaaggtgaaaaggaatttcaagcagaagtgagatccattgggaaaacccaccacaggaacctagttagattgcttgg |
47068575 |
T |
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| Q |
112 |
tttttgtgttgagggttcaaaaaggcttctggtttatgaatacatgagcaacggatcacttggaaagcttctttttggtgatcaaagacgcccagattgg |
211 |
Q |
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| T |
47068576 |
tttttgtgttgagggttcaaaaaggcttctggtttatgaatacatgagcaacggatcacttggaaagcttctttttggtgatcaaagacgcccagattgg |
47068675 |
T |
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| Q |
212 |
aatgagagagtaagaatagcactggatattgctagagggatcttgtatctccatgaagagtgtga |
276 |
Q |
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| T |
47068676 |
aatgagagagtaagaatagcactggatattgctagagggatcttgtatctccatgaagagtgtga |
47068740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 12 - 276
Target Start/End: Complemental strand, 47075854 - 47075590
Alignment:
| Q |
12 |
agagactagaaaaagtggtggaagaaggtgaaaaggaatttcaagcagaagtgagatccattgggaaaacccaccacaggaacctagttagattgctcgg |
111 |
Q |
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|||||||||| || ||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
47075854 |
agagactagagaaggtggtggaagatggggaaagggaatttcaagcagaagtgagatccattgggaaaacccaccacaggaacctagttagattgctggg |
47075755 |
T |
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| Q |
112 |
tttttgtgttgagggttcaaaaaggcttctggtttatgaatacatgagcaacggatcacttggaaagcttctttttggtgatcaaagacgcccagattgg |
211 |
Q |
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| T |
47075754 |
tttttgtcatgagggttcaaaaaggcttttggtttatgaatacatgagcaacggatcacttgaaaagcttctgtttggtgatcaaagacgtccagattgg |
47075655 |
T |
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| Q |
212 |
aatgagagagtaagaatagcactggatattgctagagggatcttgtatctccatgaagagtgtga |
276 |
Q |
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| T |
47075654 |
gatgagagagtaagaatggcactggacattgctagagggatctcgtatctccatgaagaatgtga |
47075590 |
T |
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