View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_17 (Length: 437)
Name: NF9795A_low_17
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_17 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 17 - 437
Target Start/End: Complemental strand, 7906720 - 7906300
Alignment:
| Q |
17 |
acatcacactgcacctcaggctcatgtcccagatcagagtaattcagctaagttgacacttcacaattcctttgaactgcttgaaggtggtaccgagcat |
116 |
Q |
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| T |
7906720 |
acatcacactgcacctcaggctcatgtcccagatcagagtaattcagctaagttgacacttcacaattcctttgaactgcttgaaggtggtactgagcat |
7906621 |
T |
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| Q |
117 |
gttataggggatgctaagacaagtgatgaagaatcgatccccattttactggatatgtacattgataaaaatccaaatgtggaagataattcactaagga |
216 |
Q |
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| T |
7906620 |
gttatagggtatgctaagacaagtgatgaagaatcgatccccattttactggatatgcacagtgataaaaatccaaatgtggaagataattcactaagga |
7906521 |
T |
|
| Q |
217 |
aggaggatttgaatcacaacacaaacttagatagtactggtaacttggtaaaagggaactctaactttgttgctttgagttcaagtaaccctctattggg |
316 |
Q |
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| T |
7906520 |
aggaggacttgaatcacaacacaaacttagatagtactggtaacttggtaaaaaggaactctaactttgttgctttgagttcaagtaaccctctattggg |
7906421 |
T |
|
| Q |
317 |
cccggtcaatgggaagaaggcatccctcattacaggcccctcttccttagctcagggtagcactcttgggaggtcattccccactgctactactgagtct |
416 |
Q |
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| T |
7906420 |
cccggtcaatgggaagaaggcatccctcattacaggtccctcttccttagctcagggtagcactcttgggaggtcattccccactgctactattgagtct |
7906321 |
T |
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| Q |
417 |
cttgttgtagctgctaacccc |
437 |
Q |
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| T |
7906320 |
cttgtagtaactgcaaacccc |
7906300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 69 - 376
Target Start/End: Complemental strand, 6632027 - 6631720
Alignment:
| Q |
69 |
ttgacacttcacaattcctttgaactgcttgaaggtggtaccgagcatgttataggggatgctaagacaagtgatgaagaatcgatccccattttactgg |
168 |
Q |
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||||||||||| ||||| |||||| |||||||| || | | ||||| ||||||||||||||||| | |||||||||||||| | ||||||| || ||| |
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| T |
6632027 |
ttgacacttcaaaattcttttgaattgcttgaaaatgatgctgagcaggttataggggatgctaaaatcagtgatgaagaatctaaccccattctattgg |
6631928 |
T |
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| Q |
169 |
atatgtacattgataaaaatccaaatgtggaagataattcactaaggaaggaggatttgaatcacaacacaaacttagatagtactggtaacttggtaaa |
268 |
Q |
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| T |
6631927 |
atatgtacattgacaaaaatcaaaatggggcagagaatttactaaggaaggaggaatttactcataacacaatcttagagagtactggtaacatgacaaa |
6631828 |
T |
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| Q |
269 |
agggaactctaactttgttgctttgagttcaagtaaccctctattgggcccggtcaatgggaagaaggcatccctcattacaggcccctcttccttagct |
368 |
Q |
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||| |||||| |||||| ||||||| || |||||||| | ||||| || || ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
6631827 |
tatgaaatctaaccttgttgatttgagtacatgtaacccttttttgggtcctgttaatgggaagaaggcatccctcattacaggtccctcttccttagct |
6631728 |
T |
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| Q |
369 |
cagggtag |
376 |
Q |
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||||||| |
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| T |
6631727 |
tagggtag |
6631720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 72 - 376
Target Start/End: Original strand, 31319570 - 31319871
Alignment:
| Q |
72 |
acacttcacaattcctttgaactgcttgaaggtggtaccgagcatgttataggggatgctaagacaagtgatgaagaatcgatccccattttactggata |
171 |
Q |
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||||||||||| || |||||| |||||||| ||||| | ||||||| |||||||| |||||| ||| |||||| ||||| || ||||| |||||||||| |
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| T |
31319570 |
acacttcacaactcatttgaattgcttgaaagtggttctaagcatgtcataggggaggctaagccaaatgatgaggaatctattcccatattactggata |
31319669 |
T |
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| Q |
172 |
tgtacattgataaaaatccaaatgtggaagataattcactaaggaaggaggatttgaatcacaacacaaacttagatagtactggtaacttggtaaaagg |
271 |
Q |
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|| | |||||||||||||||| ||||||||| ||||| ||| |||||||| | |||| ||| |||||||||||||| | | ||||||| ||||||||| | |
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| T |
31319670 |
tgcaaattgataaaaatccaattgtggaagacaattccctagggaaggagaaattgactcataacacaaacttagagaatcctggtaatttggtaaaaag |
31319769 |
T |
|
| Q |
272 |
gaactctaactttgttgctttgagttcaagtaaccctctattgggcccggtcaatgggaagaaggcatccctcattacaggcccctcttccttagctcag |
371 |
Q |
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||||||||| ||| |||||||||| || || ||||| |||||||| || ||||||| | | | | || ||||||| | ||||||||| |||||||| |
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| T |
31319770 |
gaactctaaaattgctgctttgagtcca---aatcctcttttgggccctgttaatgggaggcaatctttccccattacaagtccctcttccctagctcag |
31319866 |
T |
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| Q |
372 |
ggtag |
376 |
Q |
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|||| |
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| T |
31319867 |
agtag |
31319871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 199
Target Start/End: Original strand, 36769630 - 36769716
Alignment:
| Q |
113 |
gcatgttataggggatgctaagacaagtgatgaagaatcgatccccattttactggatatgtacattgataaaaatccaaatgtgga |
199 |
Q |
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|||||| |||||||| |||||| |||| ||||| ||||| | |||||| || |||||||| | || |||||||||||||||||||| |
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| T |
36769630 |
gcatgtcataggggaggctaagccaagagatgaggaatccaatcccattatattggatatgcaaatggataaaaatccaaatgtgga |
36769716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 102
Target Start/End: Complemental strand, 25863330 - 25863294
Alignment:
| Q |
66 |
aagttgacacttcacaattcctttgaactgcttgaag |
102 |
Q |
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| T |
25863330 |
aagttgacacttcagaattcctttgagctgcttgaag |
25863294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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