View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9795A_low_174 (Length: 271)

Name: NF9795A_low_174
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9795A_low_174
NF9795A_low_174
[»] chr3 (3 HSPs)
chr3 (17-271)||(11897151-11897405)
chr3 (17-271)||(26432588-26432842)
chr3 (118-202)||(23424570-23424654)
[»] chr8 (3 HSPs)
chr8 (17-271)||(23132475-23132729)
chr8 (118-221)||(26587277-26587380)
chr8 (22-180)||(14760016-14760174)
[»] chr2 (9 HSPs)
chr2 (17-271)||(14653570-14653824)
chr2 (121-270)||(26791322-26791471)
chr2 (64-269)||(40328180-40328385)
chr2 (64-269)||(35135159-35135364)
chr2 (121-218)||(573245-573342)
chr2 (118-218)||(16322502-16322602)
chr2 (121-266)||(177504-177649)
chr2 (124-218)||(3779048-3779142)
chr2 (116-202)||(42403209-42403295)
[»] chr1 (4 HSPs)
chr1 (17-271)||(20284852-20285106)
chr1 (121-218)||(50451951-50452048)
chr1 (138-271)||(50236579-50236712)
chr1 (160-218)||(23465403-23465461)
[»] chr4 (5 HSPs)
chr4 (124-271)||(54477407-54477554)
chr4 (121-218)||(3881771-3881868)
chr4 (118-270)||(46784469-46784621)
chr4 (118-228)||(14307826-14307936)
chr4 (160-228)||(14291777-14291845)
[»] chr5 (4 HSPs)
chr5 (121-227)||(32874457-32874563)
chr5 (121-271)||(7817135-7817285)
chr5 (136-170)||(20585630-20585664)
chr5 (116-197)||(6641008-6641089)
[»] scaffold0036 (1 HSPs)
scaffold0036 (121-211)||(75967-76057)
[»] chr6 (4 HSPs)
chr6 (112-218)||(13599639-13599745)
chr6 (118-271)||(24893833-24893986)
chr6 (118-202)||(24990660-24990744)
chr6 (161-218)||(35233542-35233599)
[»] chr7 (2 HSPs)
chr7 (115-218)||(16769956-16770059)
chr7 (121-266)||(1579159-1579304)


Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 271
Target Start/End: Complemental strand, 11897405 - 11897151
Alignment:
Q  17 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttattgcagc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || | |||    
T  11897405 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttggacgactgctgagttgatagtagc 11897306  T
Q  117 tgaaagcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattc 216  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||    
T  11897305 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttc 11897206  T
Q  217 caaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtga 271  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11897205 caaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtga 11897151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 17 - 271
Target Start/End: Original strand, 26432588 - 26432842
Alignment:
Q  17 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttattgcagc 116  Q
    ||||||||| |||||| ||||| ||||||||||||||||||||||| |||||||| || ||| ||||||||||||||| ||| || ||||| || |||||    
T  26432588 ggacatcatttgcaaaaaggaggtgggataaatgcggccccgtaggagtgatttgaatcggttcccatcttccttgggtgacggcggagttgatagcagc 26432687  T
Q  117 tgaaagcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattc 216  Q
     || |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||| ||||| ||||||| |||||||||||||||||||    
T  26432688 ggatagcttttccatgcaaatgatgaagagataaggggacaatggatcaccttgtcggagaccatgagaaggtttgaaagacggcaacttgttcccattc 26432787  T
Q  217 caaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtga 271  Q
    ||||||||||||||  | |  ||||  || |||||||||||||| ||||||||||    
T  26432788 caaagtatagagtagtttgatgaagagacacaatgcatgatgagtttgatggtga 26432842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 202
Target Start/End: Complemental strand, 23424654 - 23424570
Alignment:
Q  118 gaaagcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggca 202  Q
    ||||||||||||||||| || ||||| |||||||| || | ||| |||||||||| ||| ||||| |  ||||||||||| ||||    
T  23424654 gaaagcttttccatgcatagtatgaaaagataaggagagagcgggtcaccttgtctgagaccatgtgtgggcttgaaagggggca 23424570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 271
Target Start/End: Original strand, 23132475 - 23132729
Alignment:
Q  17 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttattgcagc 116  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  23132475 ggacatcatctgcaaataggagatgggataaatggggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagc 23132574  T
Q  117 tgaaagcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattc 216  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||    
T  23132575 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacgtatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttc 23132674  T
Q  217 caaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtga 271  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  23132675 caaagtatagagtaactaggagaagctacgcaatgcatgatgaacttgatggtga 23132729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 221
Target Start/End: Complemental strand, 26587380 - 26587277
Alignment:
Q  118 gaaagcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcc 217  Q
    ||||| || ||||| ||||| |||||||| || || ||||| || |||||||||||||||||||| | ||||||||| || ||||| ||||| ||||| |    
T  26587380 gaaagtttctccatacaaagaatgaagaggtagggagacaatgggtcaccttgtcggaggccatgagtaggcttgaaggggggcaatttgttaccatttc 26587281  T
Q  218 aaag 221  Q
    ||||    
T  26587280 aaag 26587277  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 180
Target Start/End: Complemental strand, 14760174 - 14760016
Alignment:
Q  22 tcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttattgcagctgaaa 121  Q
    |||||||||||||| || || ||||  || |||||||||   |||||||| |  ||| |||| ||||||||   ||| ||||| ||||| |||   || |    
T  14760174 tcatctgcaaatagtaggtgagatatctggggccccgtatttgtgatttgaaccggttcccaacttccttgattgaccgctgaatttatagcaatagaga 14760075  T
Q  122 gcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcggaggcca 180  Q
    |||||||||| ||||| |||||||| || |||||||||||||| ||||| || ||||||    
T  14760074 gcttttccatacaaagaatgaagaggtatggggacaacggatctccttggcgaaggcca 14760016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 271
Target Start/End: Original strand, 14653570 - 14653824
Alignment:
Q  17 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttattgcagc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  14653570 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggagtgatttggatgggtgcccatcttccttgggcaactgctgagtttatagcagc 14653669  T
Q  117 tgaaagcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattc 216  Q
     || ||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  14653670 ggatagcttttccatgcaaaggatgaaaaaataaggggacaacggatcaccttgttggaggccatgagaaggcttgaaaggcggcaacttgttcccattc 14653769  T
Q  217 caaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtga 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14653770 caaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtga 14653824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 121 - 270
Target Start/End: Complemental strand, 26791471 - 26791322
Alignment:
Q  121 agcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaa 220  Q
    ||||| ||||||||||| || || || || ||||| | ||||||||| || | ||||||||| | ||||| |||||| |||||| | || ||||||||||    
T  26791471 agcttctccatgcaaagaataaaaaggtacggggaaagcggatcaccctgcctgaggccatgagtaggctcgaaaggaggcaacctatttccattccaaa 26791372  T
Q  221 gtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtg 270  Q
    | |||||| | || |  ||||  |||||||||||||||||||||||||||    
T  26791371 gaatagagaagctggatgaagtaacgcaatgcatgatgagcttgatggtg 26791322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 64 - 269
Target Start/End: Complemental strand, 40328385 - 40328180
Alignment:
Q  64 gtgatttggatgggtgcccatcttccttgggcgactgctgagtttattgcagctgaaagcttttccatgcaaaggatgaagagataaggggacaacggat 163  Q
    |||||||| || ||| ||||||| ||||||  ||| || || || |||||| | || || |||||||| || |||||||| |||||||| |||||||| |    
T  40328385 gtgatttgtatcggttcccatctcccttggttgacagcggaattgattgcaacagagagtttttccatacataggatgaaaagataaggagacaacgggt 40328286  T
Q  164 caccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaagtatagagtaactcggagaagctacgcaatgcatgatgagctt 263  Q
    ||||||| || || ||||| | |||||||||||| |  | |||||| |||||||| |  || ||||| ||||| || |  || |||||||||||||| ||    
T  40328285 caccttgacgaagtccatgagtaggcttgaaaggagaaagcttgtttccattccataaaattgagtagctcggtgaggtaacacaatgcatgatgagttt 40328186  T
Q  264 gatggt 269  Q
    ||||||    
T  40328185 gatggt 40328180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 64 - 269
Target Start/End: Original strand, 35135159 - 35135364
Alignment:
Q  64 gtgatttggatgggtgcccatcttccttgggcgactgctgagtttattgcagctgaaagcttttccatgcaaaggatgaagagataaggggacaacggat 163  Q
    |||||||| || ||| ||||||| ||||||  ||| || || || |||||| | || || |||||||| || |||||||| |||||||| |||||||| |    
T  35135159 gtgatttgtatcggttcccatctcccttggttgacagcggaattgattgcaacagagagtttttccatacataggatgaaaagataaggagacaacgggt 35135258  T
Q  164 caccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaagtatagagtaactcggagaagctacgcaatgcatgatgagctt 263  Q
    ||||||| || || ||||| | |||||||||||| |  | |||||| |||||||| |  || ||||| || || || |  || |||||||||||||| ||    
T  35135259 caccttgacgaagtccatgagtaggcttgaaaggagagagcttgtttccattccataaaattgagtagcttggtgaggtaacacaatgcatgatgagttt 35135358  T
Q  264 gatggt 269  Q
    ||||||    
T  35135359 gatggt 35135364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 218
Target Start/End: Complemental strand, 573342 - 573245
Alignment:
Q  121 agcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcca 218  Q
    ||||| ||||||||||||||||| || ||||| || | |||||||||||||| ||||||||| ||||| || |||||  |||  ||||| ||||||||    
T  573342 agcttctccatgcaaaggatgaataggtaaggagagagcggatcaccttgtctgaggccatgggaaggtttaaaaggatgcattttgttaccattcca 573245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 118 - 218
Target Start/End: Complemental strand, 16322602 - 16322502
Alignment:
Q  118 gaaagcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcc 217  Q
    ||||| |||||||||||||| ||||| || || || || | ||| ||||||||||| |||||||| |  ||||||||||| |||| |||||| |||||||    
T  16322602 gaaagtttttccatgcaaagtatgaaaaggtacggagaaagcgggtcaccttgtcgaaggccatgagtgggcttgaaaggaggcatcttgtttccattcc 16322503  T
Q  218 a 218  Q
    |    
T  16322502 a 16322502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 266
Target Start/End: Complemental strand, 177649 - 177504
Alignment:
Q  121 agcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaa 220  Q
    |||||||||||||| | |||||| || ||||| ||||| || ||||||||||  || ||||| | |||||||| ||| ||| | ||||| ||||||||||    
T  177649 agcttttccatgcagatgatgaataggtaaggagacaaagggtcaccttgtcttagaccatgagtaggcttgataggaggccatttgtttccattccaaa 177550  T
Q  221 gtatagagtaactcggagaagctacgcaatgcatgatgagcttgat 266  Q
    | | |||| |  | | |||||  || |||||||||||||| |||||    
T  177549 gaacagagaatgttgaagaagtgacacaatgcatgatgagtttgat 177504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 218
Target Start/End: Original strand, 3779048 - 3779142
Alignment:
Q  124 ttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcca 218  Q
    |||||||| || |||||||| |||||||| |||| ||| |||||||| || || ||||| | |||||||||||| |  | |||||| ||||||||    
T  3779048 ttttccatacagaggatgaaaagataaggagacagcgggtcaccttgacgaagtccatgagtaggcttgaaaggagagagcttgtttccattcca 3779142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 202
Target Start/End: Original strand, 42403209 - 42403295
Alignment:
Q  116 ctgaaagcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggca 202  Q
    ||||||||||||||||||| || || || |||||||| || |  || |||||||| ||||||||||| |  ||||||||||| ||||    
T  42403209 ctgaaagcttttccatgcacagtataaatagataaggtgagagagggtcaccttgccggaggccatgagtgggcttgaaaggaggca 42403295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 17 - 271
Target Start/End: Complemental strand, 20285106 - 20284852
Alignment:
Q  17 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttattgcagc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  20285106 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagc 20285007  T
Q  117 tgaaagcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattc 216  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||   ||||| |||    
T  20285006 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcgcaggccatgagaaggctcgaaaggcggcaaccctttcccgttc 20284907  T
Q  217 caaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtga 271  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  20284906 caaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtga 20284852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 121 - 218
Target Start/End: Complemental strand, 50452048 - 50451951
Alignment:
Q  121 agcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcca 218  Q
    ||||| ||||| ||||| |||||||| ||||| || | |||||||||||||||||||||||| | ||| |||||| ||||||  ||||| ||||||||    
T  50452048 agcttctccatacaaagaatgaagaggtaaggagaaagcggatcaccttgtcggaggccatgtgtaggtttgaaatgcggcattttgttaccattcca 50451951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 271
Target Start/End: Original strand, 50236579 - 50236712
Alignment:
Q  138 gatgaagagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaagtatagagtaactcgga 237  Q
    |||||| || |||||||| | ||||||||||| || ||||||||| | |||||||||||| |||| ||||||||| ||||| |  ||||||||  | ||     
T  50236579 gatgaaaaggtaaggggaaagcggatcaccttatctgaggccatgagtaggcttgaaagggggcatcttgttcccgttccataagatagagtaggtgggt 50236678  T
Q  238 gaagctacgcaatgcatgatgagcttgatggtga 271  Q
    || |  || |||||||||||||| ||| ||||||    
T  50236679 gaggagacacaatgcatgatgagtttggtggtga 50236712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 23465461 - 23465403
Alignment:
Q  160 ggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcca 218  Q
    |||||||||||||| || ||||| | |||||||||| ||||||| ||||| ||||||||    
T  23465461 ggatcaccttgtcgaagaccatgagtaggcttgaaatgcggcaatttgttaccattcca 23465403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 124 - 271
Target Start/End: Original strand, 54477407 - 54477554
Alignment:
Q  124 ttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaagta 223  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||| || || ||||| | |||||||||||  || | |||||| ||||||||||| |    
T  54477407 ttttccatgcaaagaatgaagagataaggggacaaaggatcaccttggcgcagaccatgtgtaggcttgaaagatggaagcttgtttccattccaaagga 54477506  T
Q  224 tagagtaactcggagaagctacgcaatgcatgatgagcttgatggtga 271  Q
    || ||||  | |  || |  || |||||||||||||||||||||||||    
T  54477507 taaagtattttgatgatgaaacacaatgcatgatgagcttgatggtga 54477554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 121 - 218
Target Start/End: Complemental strand, 3881868 - 3881771
Alignment:
Q  121 agcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcca 218  Q
    ||||||||||| ||||| |||||||| ||| | || | |||||||||||||||||||||||| | ||| |||||| ||||||  ||||| ||||||||    
T  3881868 agcttttccatacaaagaatgaagaggtaaagagaaagcggatcaccttgtcggaggccatgtgtaggtttgaaatgcggcattttgttaccattcca 3881771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 118 - 270
Target Start/End: Original strand, 46784469 - 46784621
Alignment:
Q  118 gaaagcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcc 217  Q
    ||||| |||| |||||||||||||||||| || || || |  |||||||||||||  |||||||| | ||| |||||||||||||| || || |||||||    
T  46784469 gaaagttttttcatgcaaaggatgaagaggtagggagatagaggatcaccttgtctaaggccatgagtaggtttgaaaggcggcaatttatttccattcc 46784568  T
Q  218 aaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtg 270  Q
    |||| |  ||| || | |  || |  || ||||||||||||||||||||||||    
T  46784569 aaaggacggagaaagttgatgacgtaacacaatgcatgatgagcttgatggtg 46784621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 228
Target Start/End: Complemental strand, 14307936 - 14307826
Alignment:
Q  118 gaaagcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcc 217  Q
    ||||| |||||||| |||| |||||| || ||||| ||    ||||| ||||||| ||||||||| |||||||| |||||  ||| ||||||||||||||    
T  14307936 gaaagtttttccatacaaatgatgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattcc 14307837  T
Q  218 aaagtatagag 228  Q
    |||| ||||||    
T  14307836 aaagaatagag 14307826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 228
Target Start/End: Complemental strand, 14291845 - 14291777
Alignment:
Q  160 ggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaagtatagag 228  Q
    ||||| ||||||| ||||||||| |||||||| |||||  ||| |||||||||||||||||| ||||||    
T  14291845 ggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaatagag 14291777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 121 - 227
Target Start/End: Original strand, 32874457 - 32874563
Alignment:
Q  121 agcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaa 220  Q
    |||||||||||||||| |||||| | ||| || || | ||| || ||||| ||||||||||| |||||||||||||| ||||||||||||||||| ||||    
T  32874457 agcttttccatgcaaatgatgaataaatagggagagagcgggtctccttggcggaggccatgagaaggcttgaaaggaggcaacttgttcccatttcaaa 32874556  T
Q  221 gtataga 227  Q
    | |||||    
T  32874557 ggataga 32874563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 271
Target Start/End: Complemental strand, 7817285 - 7817135
Alignment:
Q  121 agcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaa 220  Q
    ||||||||||||||||| ||||| || ||||| || || || ||||| |||| ||| ||||| | |||||||||||  || |  |||||||||||||| |    
T  7817285 agcttttccatgcaaagaatgaaaaggtaaggagataaagggtcaccctgtctgagaccatgagtaggcttgaaagaaggaagtttgttcccattccata 7817186  T
Q  221 gtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtga 271  Q
      ||||||||  | |  || | ||| |||||||||||||||||||| ||||    
T  7817185 aaatagagtagttggaggatgatacacaatgcatgatgagcttgattgtga 7817135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 170
Target Start/End: Complemental strand, 20585664 - 20585630
Alignment:
Q  136 aggatgaagagataaggggacaacggatcaccttg 170  Q
    ||||||||||||||||| |||||||||||||||||    
T  20585664 aggatgaagagataaggtgacaacggatcaccttg 20585630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 197
Target Start/End: Original strand, 6641008 - 6641089
Alignment:
Q  116 ctgaaagcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaagg 197  Q
    ||||||| ||||||||||| |  |||||||| || || || | ||||||||||| |||||||||||| |  |||||||||||    
T  6641008 ctgaaagtttttccatgcacataatgaagaggtagggagagagcggatcaccttttcggaggccatgagtgggcttgaaagg 6641089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 121 - 211
Target Start/End: Complemental strand, 76057 - 75967
Alignment:
Q  121 agcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcc 211  Q
    ||||||||||||||||||||||| ||||||||||||||| | |||||||||| ||| ||||| | ||||||||| |  |||| ||||||||    
T  76057 agcttttccatgcaaaggatgaaaagataaggggacaactggtcaccttgtctgagaccatgagtaggcttgaaggaaggcagcttgttcc 75967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 218
Target Start/End: Complemental strand, 13599745 - 13599639
Alignment:
Q  112 gcagctgaaagcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcc 211  Q
    ||||||||||| |||||||| || | ||||||||||||||| || |  ||||||||||| |||||  |||| | |||||||||  |||| |||||||| |    
T  13599745 gcagctgaaagtttttccatacacaagatgaagagataaggtgaaagaggatcaccttgacggagatcatgagtaggcttgaattgcggaaacttgttac 13599646  T
Q  212 cattcca 218  Q
    |||||||    
T  13599645 cattcca 13599639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 271
Target Start/End: Original strand, 24893833 - 24893986
Alignment:
Q  118 gaaagcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcc 217  Q
    ||||||||||||||||| || ||||| |||||||| || | ||| |||||||||| ||| ||||| |  ||||||||||| ||||  ||||| |||||||    
T  24893833 gaaagcttttccatgcatagtatgaaaagataaggagagagcgggtcaccttgtctgagaccatgtgtgggcttgaaagggggcattttgttaccattcc 24893932  T
Q  218 aaagtatagagtaactcggagaagct-acgcaatgcatgatgagcttgatggtga 271  Q
    | | ||| ||| ||   |||| || | || |||||||||||||||||||||||||    
T  24893933 ataatatggag-aatgtggaggaggtgacacaatgcatgatgagcttgatggtga 24893986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 202
Target Start/End: Original strand, 24990660 - 24990744
Alignment:
Q  118 gaaagcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggca 202  Q
    |||||||| ||||||||||| ||||| |||||||| || | ||| |||||||||| ||| ||||| |  ||||||||||| ||||    
T  24990660 gaaagcttctccatgcaaagaatgaaaagataaggagagagcgggtcaccttgtctgagaccatgggtgggcttgaaagggggca 24990744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 35233599 - 35233542
Alignment:
Q  161 gatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcca 218  Q
    |||||||||||||||| ||||| | ||||||||||   ||||||||||| ||||||||    
T  35233599 gatcaccttgtcggagaccatgtgtaggcttgaaattaggcaacttgtttccattcca 35233542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 218
Target Start/End: Original strand, 16769956 - 16770059
Alignment:
Q  115 gctgaaagcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccat 214  Q
    ||||| || |||||||| || | ||||||||||||||| || |  |||||||||||||| || ||||| | ||| |||||| ||||||| ||||| ||||    
T  16769956 gctgagagtttttccatacacaagatgaagagataaggtgaaagaggatcaccttgtcgaagaccatgagtaggtttgaaatgcggcaatttgttaccat 16770055  T
Q  215 tcca 218  Q
    ||||    
T  16770056 tcca 16770059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 266
Target Start/End: Original strand, 1579159 - 1579304
Alignment:
Q  121 agcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaa 220  Q
    ||||||||||||||||| || ||||| |||||||| | ||||||||| |||| ||| ||||| | ||| |  || || ||||||||||| | |||| | |    
T  1579159 agcttttccatgcaaagaataaagaggtaaggggagagcggatcaccctgtctgagcccatgagtaggatgaaagggaggcaacttgtttctattctaga 1579258  T
Q  221 gtatagagtaactcggagaagctacgcaatgcatgatgagcttgat 266  Q
    | |||||| || | | |||||  || |||||||||||||| |||||    
T  1579259 gaatagagaaagttgaagaagaaacacaatgcatgatgagattgat 1579304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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