View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_182 (Length: 269)
Name: NF9795A_low_182
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_182 |
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Alignment Details
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 135 - 259
Target Start/End: Complemental strand, 35936856 - 35936732
Alignment:
| Q |
135 |
ccacacttcgaattcaaacatttagaaatgagaaaacagtatccatcaaacatttagaaatcagaaaacagtctccaacactgaacattcaaccccactc |
234 |
Q |
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| T |
35936856 |
ccacacttcgaattcaaacatttagaaatgagaaaacagtatccatcaaacatttagaaatcagaacacagtctccaacactgaacattcaaccccactc |
35936757 |
T |
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| Q |
235 |
acaaaaatcaagcattccagtataa |
259 |
Q |
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| T |
35936756 |
acaaaaatcaagcattccagaataa |
35936732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 35936990 - 35936908
Alignment:
| Q |
1 |
tcatcaaaatcaaccacacttcaaattcaaacatttaagaatcagagaaaacaacatccaaaaccgaacattcgactccactg |
83 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
35936990 |
tcatcaaaatcaaccacacttcaaattcaaacatttaagaatcagagaaaacaacatccaaaaccgaacactcgactccactg |
35936908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 35936869 - 35936833
Alignment:
| Q |
1 |
tcatcaaaatcaaccacacttcaaattcaaacattta |
37 |
Q |
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|||||||||||||||||||||| |||||||||||||| |
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| T |
35936869 |
tcatcaaaatcaaccacacttcgaattcaaacattta |
35936833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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