View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_183 (Length: 269)
Name: NF9795A_low_183
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_183 |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 23747652 - 23747909
Alignment:
| Q |
1 |
tcagtaagggaaatgatggtgaaagtcagaacaaaacaaataaggatatgagctatatttatcaagaacaaagggtgcaaccatgtcaccttagctcatc |
100 |
Q |
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| T |
23747652 |
tcagtaagggaaatgatggtgaaactcagaacaaaacaaataaggatatgagctatatttatcaagaacaaagggtgcaaccatgtcaccttagctcatc |
23747751 |
T |
|
| Q |
101 |
aatctattatggtggccaagacgtatattctcgtcctcagagtgcacgagattcaggattgaacactatggtaattgcatttattaatataatttgtgtt |
200 |
Q |
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| T |
23747752 |
aatctattatggtggccaagacgtatattctcgtcctcagagtgcacgagattcaggattgaacactatggtaattgcatttattaatataatttgtgtt |
23747851 |
T |
|
| Q |
201 |
tataatatgtccgacattgtataaacaacttaaccaacattggtatagatgtgcgtct |
258 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23747852 |
tataatatgttcgacattgtataaacaacttaaccaacattggtatagatgtgcgtct |
23747909 |
T |
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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 128
Target Start/End: Original strand, 6215933 - 6215980
Alignment:
| Q |
81 |
ccatgtcaccttagctcatcaatctattatggtggccaagacgtatat |
128 |
Q |
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| T |
6215933 |
ccatgtcaccttagttcatcaatctattatggtggccaagacatatat |
6215980 |
T |
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