View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_197 (Length: 258)
Name: NF9795A_low_197
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_197 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 2943711 - 2943491
Alignment:
| Q |
18 |
acatcaacattttctgtatacacgtcagaaataagaatatattaagcttcaactttacctgcacaggaatatttggaagcttggtcggtgcttgggtaaa |
117 |
Q |
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| T |
2943711 |
acatcaacattttctgtatacatgtcagaaataacaatatattaagcttcaactttacctgcacaggaatatttggaagcttggtcggtgcttgggtaaa |
2943612 |
T |
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| Q |
118 |
ttttgaatgatcgggttgtaacctcatttggcttcatgatcaaaaattgctcctgaacagtgttcaataaaaattaaatacctaaacttgacgatcaatg |
217 |
Q |
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| T |
2943611 |
ttttgaatgatcgggttgtaatctcatttggcttcatgatcaaaaattgctcctgaacagtgttcaataaaaattaaatacctaaacttgaagatcaatg |
2943512 |
T |
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| Q |
218 |
aaactatacaactggaatggt |
238 |
Q |
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| T |
2943511 |
aaactatacaactggaatggt |
2943491 |
T |
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