View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9795A_low_201 (Length: 254)

Name: NF9795A_low_201
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9795A_low_201
NF9795A_low_201
[»] chr2 (1 HSPs)
chr2 (2-170)||(18031190-18031359)
[»] chr4 (1 HSPs)
chr4 (8-158)||(55156474-55156629)
[»] chr3 (3 HSPs)
chr3 (8-170)||(29642020-29642186)
chr3 (76-126)||(4803977-4804027)
chr3 (79-126)||(10535703-10535750)
[»] chr7 (1 HSPs)
chr7 (95-164)||(22002453-22002522)
[»] chr8 (1 HSPs)
chr8 (70-166)||(32309433-32309529)
[»] chr6 (1 HSPs)
chr6 (70-166)||(33364663-33364759)
[»] chr1 (2 HSPs)
chr1 (70-166)||(30330131-30330227)
chr1 (79-126)||(25626139-25626186)
[»] scaffold0009 (1 HSPs)
scaffold0009 (79-126)||(89640-89687)


Alignment Details
Target: chr2 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 2 - 170
Target Start/End: Complemental strand, 18031359 - 18031190
Alignment:
Q  2 gtgggtacaagaaaactgaaagctcattccattatgtttacattatgaaaagaa-tattgtcatattgttttctgttatcacgttgaaaacattttatat 100  Q
    ||||| ||||||||| || |||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||    
T  18031359 gtggggacaagaaaattggaagctcattccattatatttacattatgaaaagaagtattgtcatattcttttctgttatcacattgaaaacattttatat 18031260  T
Q  101 ctctttcaaattgtgttttaatgtgattaagaaaatgaagaaaagtggaataagcttgagatttatgtgc 170  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18031259 ctcttttaaattgtgttttaatgtgattaagaaaatgaagaaaagtggaataagcttgagatttatgtgc 18031190  T

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Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 8 - 158
Target Start/End: Complemental strand, 55156629 - 55156474
Alignment:
Q  8 acaagaaaactgaaagctcattccattatgtttaca----ttatgaaaagaa-tattgtcatattgttttctgttatcacgttgaaaacattttatatct 102  Q
    ||||||||||   |||||||||||||| ||||||||    ||||  |||||| |||||||||||| ||||| |||||||| |||||||||||||||||||    
T  55156629 acaagaaaaccagaagctcattccattttgtttacagaaattatagaaagaagtattgtcatattcttttccgttatcacattgaaaacattttatatct 55156530  T
Q  103 ctttcaaattgtgttttaatgtgattaagaaaatgaagaaaagtggaataagcttg 158  Q
    ||||||||||||||||||||||||||  |||||||||||||| |||||||| ||||    
T  55156529 ctttcaaattgtgttttaatgtgattgcgaaaatgaagaaaaatggaataaacttg 55156474  T

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Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 8 - 170
Target Start/End: Complemental strand, 29642186 - 29642020
Alignment:
Q  8 acaagaaaactgaaagctcattccattatgtttaca----ttatgaaaagaata-ttgtcatattgttttctgttatcacgttgaaaacattttatatct 102  Q
    |||||||||||| |||||| ||||||| ||||||||    ||||| |||||| | |||||||||| ||||| |||||||| ||||||||||| |||||||    
T  29642186 acaagaaaactggaagctc-ttccattttgtttacaaagattatggaaagaagaattgtcatattattttccgttatcacattgaaaacattgtatatct 29642088  T
Q  103 ctttcaaattgtgttttaatgtgattaagaaaatgaagaaaagtggaataagcttgagatttatgtgc 170  Q
    |||| |||||||||||||||||||||  |||||| ||||||||||||| ||||||||||||| |||||    
T  29642087 cttttaaattgtgttttaatgtgattgcgaaaataaagaaaagtggaaaaagcttgagatttgtgtgc 29642020  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 126
Target Start/End: Original strand, 4803977 - 4804027
Alignment:
Q  76 ttatcacgttgaaaacattttatatctctttcaaattgtgttttaatgtga 126  Q
    ||||||| ||||||||||||||| || | ||||||||||||||||||||||    
T  4803977 ttatcacattgaaaacattttatttcacgttcaaattgtgttttaatgtga 4804027  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 126
Target Start/End: Original strand, 10535703 - 10535750
Alignment:
Q  79 tcacgttgaaaacattttatatctctttcaaattgtgttttaatgtga 126  Q
    |||| ||||||||||||||| || | ||||||||||||||||||||||    
T  10535703 tcacattgaaaacattttatttcacgttcaaattgtgttttaatgtga 10535750  T

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Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 95 - 164
Target Start/End: Original strand, 22002453 - 22002522
Alignment:
Q  95 ttatatctctttcaaattgtgttttaatgtgattaagaaaatgaagaaaagtggaataagcttgagattt 164  Q
    |||||||||||||||||| ||||||||| |||||| ||||||||| ||||||||||||||||||||||||    
T  22002453 ttatatctctttcaaattttgttttaatttgattaggaaaatgaataaaagtggaataagcttgagattt 22002522  T

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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 70 - 166
Target Start/End: Original strand, 32309433 - 32309529
Alignment:
Q  70 tttctgttatcacgttgaaaacattttatatctctttcaaattgtgttttaatgtgattaagaaaatgaagaaaagtggaataagcttgagatttat 166  Q
    |||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||  ||| || |||||| |||| | |||||| |||||||    
T  32309433 tttccgttatcacattgaaaacatttaatatctctttcaaattgtgttttaatgtgattacaaaattggagaaaaatggagtgagcttgtgatttat 32309529  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 70 - 166
Target Start/End: Original strand, 33364663 - 33364759
Alignment:
Q  70 tttctgttatcacgttgaaaacattttatatctctttcaaattgtgttttaatgtgattaagaaaatgaagaaaagtggaataagcttgagatttat 166  Q
    |||| |||||||| |||||||||||| |||||| |||||||||||||||||||||||||| |||| || |||||| |||| | |||||| |||||||    
T  33364663 tttccgttatcacattgaaaacatttaatatctttttcaaattgtgttttaatgtgattacgaaattggagaaaaatggagtgagcttgtgatttat 33364759  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 70 - 166
Target Start/End: Complemental strand, 30330227 - 30330131
Alignment:
Q  70 tttctgttatcacgttgaaaacattttatatctctttcaaattgtgttttaatgtgattaagaaaatgaagaaaagtggaataagcttgagatttat 166  Q
    |||| |||||||| |||||||||||| |||||| |||||||||||||||||||||||||| |||| || |||||| |||| | |||||| |||||||    
T  30330227 tttccgttatcacattgaaaacatttaatatctttttcaaattgtgttttaatgtgattacgaaattggagaaaaatggagtgagcttgtgatttat 30330131  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 126
Target Start/End: Original strand, 25626139 - 25626186
Alignment:
Q  79 tcacgttgaaaacattttatatctctttcaaattgtgttttaatgtga 126  Q
    |||| ||||||||||||||| || | ||||||||||||||||||||||    
T  25626139 tcacattgaaaacattttatttcacgttcaaattgtgttttaatgtga 25626186  T

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Target: scaffold0009 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 126
Target Start/End: Complemental strand, 89687 - 89640
Alignment:
Q  79 tcacgttgaaaacattttatatctctttcaaattgtgttttaatgtga 126  Q
    |||| ||||||||||||||| || | ||||||||||||||||||||||    
T  89687 tcacattgaaaacattttatttcacgttcaaattgtgttttaatgtga 89640  T

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