View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_203 (Length: 252)
Name: NF9795A_low_203
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_203 |
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| [»] chr5 (3 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 7 - 252
Target Start/End: Original strand, 32248650 - 32248893
Alignment:
| Q |
7 |
tttggtgttgttgttgctagttttgttattgaattgcactcttttccttcgtgaggatttatcctacttcttgggttttggtctagtccccccaagatgt |
106 |
Q |
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| T |
32248650 |
tttggtcttgttgttgctagttttgttattgaattgcactctattccttcgtgaggatttatcctacttcttgggttttggtctagt-ctcccaagatgt |
32248748 |
T |
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| Q |
107 |
ttattgtatttctttatctatcaataaatttgttagtttgttgcaaattatagtagtgaatttggggtgttaatctaattaggattaggatatcaagttt |
206 |
Q |
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| T |
32248749 |
ttattgtatttaattatctatcaataaatttgttagtttgttgcaaattatagtagtgaattttgggtgttaat-taattaggattaagatatcaagttt |
32248847 |
T |
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| Q |
207 |
ttcttctaatgtccatgcactctaaattttgcaaagttgaacatga |
252 |
Q |
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| T |
32248848 |
ttcttctaatgtccatgcactctaaattttgcaaagttgaacatga |
32248893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 81 - 216
Target Start/End: Original strand, 32236485 - 32236620
Alignment:
| Q |
81 |
gttttggtctagtccccccaagatgtttattgtatttctttatctatcaataaatttgttagtttgttgcaaattatagtagtgaatttggggtgttaat |
180 |
Q |
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| T |
32236485 |
gttttggtctagtccccccaagatgtttattgtatatctttctctatcaataaatttgttagtttgttgcaaattatagtagtgaattttgggtgttaat |
32236584 |
T |
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| Q |
181 |
ctaattaggattaggatatcaagtttttcttctaat |
216 |
Q |
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| T |
32236585 |
ctaattaggattatgatatcaagtttttcttctaat |
32236620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 31 - 252
Target Start/End: Original strand, 32254943 - 32255157
Alignment:
| Q |
31 |
gttattgaattgcactcttttccttcgtgaggatttatcctacttcttgggttttggtctagtccccccaagatgtttattgtatttctttatctatcaa |
130 |
Q |
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| T |
32254943 |
gttattgaattgcactctttttcttcatgagcggttatcctacttcttgggttttggtctatcccttccaagatttttattgtatttcttta--tgtcaa |
32255040 |
T |
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| Q |
131 |
taaatttgttagtttgttgcaaattata-gtagtgaatttggggtgttaatctaattaggattaggatatcaagtttttcttctaatgtccatgcactct |
229 |
Q |
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| T |
32255041 |
taaatttgttagggtgttgcaaatgataggtagtgaattttgggtgtcaactta------attaggatgtcaactttttcttctgatgtccatgcactct |
32255134 |
T |
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| Q |
230 |
aaattttgcaaagttgaacatga |
252 |
Q |
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| T |
32255135 |
aatatttgcaaagttgaacatga |
32255157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 252
Target Start/End: Original strand, 23202952 - 23203089
Alignment:
| Q |
110 |
ttgtatttctttatctatcaataaatttgttagtttgttgcaaattata-gtagtgaatttggggtgttaatctaattaggattaggatatcaagttttt |
208 |
Q |
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| T |
23202952 |
ttgtatttctttatttatcaataaatttgttaggatgttgcaaatgataggtaatgaatttaggatctcaaccta------gttaggatgtcaagctcat |
23203045 |
T |
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| Q |
209 |
cttctaatgtccatgcactctaaattttgcaaagttgaacatga |
252 |
Q |
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| T |
23203046 |
catctaatgcccatgcactctaatttttgcaaagttgaacatga |
23203089 |
T |
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