View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_205 (Length: 251)
Name: NF9795A_low_205
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_205 |
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| [»] chr3 (3 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 11897405 - 11897151
Alignment:
| Q |
17 |
ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttattgcagc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || | ||| |
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| T |
11897405 |
ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttggacgactgctgagttgatagtagc |
11897306 |
T |
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| Q |
117 |
tgaaagcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcgg--------------------aggcggcaacttgttcccattc |
196 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
11897305 |
tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttc |
11897206 |
T |
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| Q |
197 |
caaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtga |
251 |
Q |
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| T |
11897205 |
caaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtga |
11897151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 17 - 176
Target Start/End: Original strand, 26432588 - 26432747
Alignment:
| Q |
17 |
ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttattgcagc |
116 |
Q |
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||||||||| |||||| ||||| ||||||||||||||||||||||| |||||||| || ||| ||||||||||||||| ||| || ||||| || ||||| |
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| T |
26432588 |
ggacatcatttgcaaaaaggaggtgggataaatgcggccccgtaggagtgatttgaatcggttcccatcttccttgggtgacggcggagttgatagcagc |
26432687 |
T |
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| Q |
117 |
tgaaagcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcggag |
176 |
Q |
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| T |
26432688 |
ggatagcttttccatgcaaatgatgaagagataaggggacaatggatcaccttgtcggag |
26432747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 251
Target Start/End: Original strand, 26432769 - 26432842
Alignment:
| Q |
178 |
cggcaacttgttcccattccaaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtga |
251 |
Q |
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||||||||||||||||||||||||||||||||| | | |||| || |||||||||||||| |||||||||| |
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| T |
26432769 |
cggcaacttgttcccattccaaagtatagagtagtttgatgaagagacacaatgcatgatgagtttgatggtga |
26432842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 23132475 - 23132729
Alignment:
| Q |
17 |
ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttattgcagc |
116 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
23132475 |
ggacatcatctgcaaataggagatgggataaatggggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagc |
23132574 |
T |
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| Q |
117 |
tgaaagcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcgg--------------------aggcggcaacttgttcccattc |
196 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||| ||| |
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| T |
23132575 |
tgaaagcttttccatgcaaaggatgaaaagataaggggacaacgtatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttc |
23132674 |
T |
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| Q |
197 |
caaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtga |
251 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
23132675 |
caaagtatagagtaactaggagaagctacgcaatgcatgatgaacttgatggtga |
23132729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 170
Target Start/End: Complemental strand, 14760174 - 14760026
Alignment:
| Q |
22 |
tcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttattgcagctgaaa |
121 |
Q |
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|||||||||||||| || || |||| || ||||||||| |||||||| | ||| |||| |||||||| ||| ||||| ||||| ||| || | |
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| T |
14760174 |
tcatctgcaaatagtaggtgagatatctggggccccgtatttgtgatttgaaccggttcccaacttccttgattgaccgctgaatttatagcaatagaga |
14760075 |
T |
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| Q |
122 |
gcttttccatgcaaaggatgaagagataaggggacaacggatcaccttg |
170 |
Q |
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|||||||||| ||||| |||||||| || |||||||||||||| ||||| |
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| T |
14760074 |
gcttttccatacaaagaatgaagaggtatggggacaacggatctccttg |
14760026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 14653570 - 14653824
Alignment:
| Q |
17 |
ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttattgcagc |
116 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
14653570 |
ggacatcatctgcaaataggagatgggataaatgcggccccgtaggagtgatttggatgggtgcccatcttccttgggcaactgctgagtttatagcagc |
14653669 |
T |
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| Q |
117 |
tgaaagcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcgg--------------------aggcggcaacttgttcccattc |
196 |
Q |
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|| ||||||||||||||||||||||| | ||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
14653670 |
ggatagcttttccatgcaaaggatgaaaaaataaggggacaacggatcaccttgttggaggccatgagaaggcttgaaaggcggcaacttgttcccattc |
14653769 |
T |
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| Q |
197 |
caaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtga |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14653770 |
caaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtga |
14653824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 178
Target Start/End: Complemental strand, 573342 - 573285
Alignment:
| Q |
121 |
agcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcggaggc |
178 |
Q |
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||||| ||||||||||||||||| || ||||| || | |||||||||||||| ||||| |
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| T |
573342 |
agcttctccatgcaaaggatgaataggtaaggagagagcggatcaccttgtctgaggc |
573285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 154; Significance: 9e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 20285106 - 20284852
Alignment:
| Q |
17 |
ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttattgcagc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
20285106 |
ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagc |
20285007 |
T |
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| Q |
117 |
tgaaagcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcg--------------------gaggcggcaacttgttcccattc |
196 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||| ||| |
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| T |
20285006 |
tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcgcaggccatgagaaggctcgaaaggcggcaaccctttcccgttc |
20284907 |
T |
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| Q |
197 |
caaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtga |
251 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
20284906 |
caaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtga |
20284852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 178
Target Start/End: Complemental strand, 50452048 - 50451991
Alignment:
| Q |
121 |
agcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcggaggc |
178 |
Q |
| |
|
||||| ||||| ||||| |||||||| ||||| || | |||||||||||||||||||| |
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| T |
50452048 |
agcttctccatacaaagaatgaagaggtaaggagaaagcggatcaccttgtcggaggc |
50451991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 76057 - 76006
Alignment:
| Q |
121 |
agcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtc |
172 |
Q |
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|
||||||||||||||||||||||| ||||||||||||||| | |||||||||| |
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| T |
76057 |
agcttttccatgcaaaggatgaaaagataaggggacaactggtcaccttgtc |
76006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 124 - 170
Target Start/End: Original strand, 54477407 - 54477453
Alignment:
| Q |
124 |
ttttccatgcaaaggatgaagagataaggggacaacggatcaccttg |
170 |
Q |
| |
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|||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
54477407 |
ttttccatgcaaagaatgaagagataaggggacaaaggatcaccttg |
54477453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 178
Target Start/End: Complemental strand, 3881868 - 3881811
Alignment:
| Q |
121 |
agcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcggaggc |
178 |
Q |
| |
|
||||||||||| ||||| |||||||| ||| | || | |||||||||||||||||||| |
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|
| T |
3881868 |
agcttttccatacaaagaatgaagaggtaaagagaaagcggatcaccttgtcggaggc |
3881811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 170
Target Start/End: Complemental strand, 20585664 - 20585630
Alignment:
| Q |
136 |
aggatgaagagataaggggacaacggatcaccttg |
170 |
Q |
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||||||||||||||||| ||||||||||||||||| |
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| T |
20585664 |
aggatgaagagataaggtgacaacggatcaccttg |
20585630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 13599745 - 13599681
Alignment:
| Q |
112 |
gcagctgaaagcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcggag |
176 |
Q |
| |
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||||||||||| |||||||| || | ||||||||||||||| || | ||||||||||| ||||| |
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| T |
13599745 |
gcagctgaaagtttttccatacacaagatgaagagataaggtgaaagaggatcaccttgacggag |
13599681 |
T |
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