View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_213 (Length: 251)
Name: NF9795A_low_213
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_213 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 30841488 - 30841247
Alignment:
| Q |
1 |
tgcggtgcaagtaagtgtaagtggatgaaaaagtttatgtttgacggggggtatgatgaattgatgagctcacacctggagagaagattgttgtgtaaca |
100 |
Q |
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| T |
30841488 |
tgcggtgcaagtaagtgtaagtggatgaaaaagtttatgtttgacggggggtatgatgaattgatgagcttacacctggagagaagattgtagtgtaaca |
30841389 |
T |
|
| Q |
101 |
agcgtgagttggaagttgcaagtatgagttagacttagaagtat-acattacttagaaaagtgaaggtagagcacttataaataagattactcataaacc |
199 |
Q |
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| T |
30841388 |
accgtgagttggaagttgcaagtatgagttagacttagaagtataacattacttagaaaagtgaaggttgaacacttataaataagatgactcataaacc |
30841289 |
T |
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| Q |
200 |
tattgttttaaggttttgggtaaagatgtgatgtccatctca |
241 |
Q |
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| T |
30841288 |
tatttttttaaggttttgggtaaagatgcggtgtccaactca |
30841247 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 41745381 - 41745440
Alignment:
| Q |
175 |
ttataaataagattactcataaacctattgttttaaggttttgggtaaagatgtgatgtc |
234 |
Q |
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| T |
41745381 |
ttataaatgagatgactcataaacctatttttttaaaattttggataaaaatgtgatgtc |
41745440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 26074869 - 26074836
Alignment:
| Q |
192 |
cataaacctattgttttaaggttttgggtaaaga |
225 |
Q |
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| T |
26074869 |
cataaacctattgtcttaaggttttgggtaaaga |
26074836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 51768163 - 51768114
Alignment:
| Q |
174 |
cttataaataagattactcataaacctattgttttaaggttttgggtaaa |
223 |
Q |
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||||||||||||| |||||||||| ||||| ||||||||||||||||| |
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| T |
51768163 |
cttataaataagaggactcataaactcattgtcttaaggttttgggtaaa |
51768114 |
T |
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