View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_216 (Length: 251)
Name: NF9795A_low_216
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_216 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 23210832 - 23211072
Alignment:
| Q |
11 |
tgagatggacatcacatcttaacctaaatcttaagacattgagttatgagtcttataacttatatagtgttcaacatccattttttcatctaatatgaga |
110 |
Q |
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| T |
23210832 |
tgagttggacatcacatcttaacctaaatcttaagacattgagttacgggtcttataacttatatagtgttcaacatccattttttcatctaatatgaga |
23210931 |
T |
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| Q |
111 |
cttctgcgcacacttgttacataataatccctcatccatccattcatatgtgtacatgctcctcctcaattggccgcactaaacatgacacattgcccta |
210 |
Q |
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| T |
23210932 |
cttctgcgtacacttgttacataataacctctcatccatccattcatatgtgtacatgctcctcctcaattggccgcactaaacatgacacattgcccta |
23211031 |
T |
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| Q |
211 |
ccattattgttaggaagacttccggcataatgagtcattcg |
251 |
Q |
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| T |
23211032 |
ccattattgttaggaagacttccggcataatgagtcattcg |
23211072 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 38259343 - 38259380
Alignment:
| Q |
78 |
tgttcaacatccattttttcatctaatatgagacttct |
115 |
Q |
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| T |
38259343 |
tgttcaacatctattttttcatctaatatgagacttct |
38259380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 102
Target Start/End: Original strand, 31503515 - 31503547
Alignment:
| Q |
70 |
ttatatagtgttcaacatccattttttcatcta |
102 |
Q |
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| T |
31503515 |
ttatatagtgttcaacatccattttctcatcta |
31503547 |
T |
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