View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_217 (Length: 250)
Name: NF9795A_low_217
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_217 |
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Alignment Details
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 15 - 247
Target Start/End: Original strand, 33518230 - 33518461
Alignment:
| Q |
15 |
tggacatcattccacaaaatagaatcaaacaattcctgaacaaaaggaaaagaaacgagtcaaccaaacgtattgaaccttttctttgttattaggtatt |
114 |
Q |
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| T |
33518230 |
tggacatcattccacaaaatagaatcaaacaattcctgaacaagaggaaaagaaacgagtcaaccaaacgtattgaaccttttttttgttattaggtatt |
33518329 |
T |
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| Q |
115 |
ttnnnnnnntggctcatgtattcatttatgagttcaaatagtgnnnnnnnnncctttgtaaaattcttgtaaagtgataatagatatatcaagaatacat |
214 |
Q |
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| T |
33518330 |
taaaaaaaaaggctcatgtattcatttatgagttcaaatagtgttttttttttctttgtaaaattcttgtagagtgataatagatatatcaagaatacat |
33518429 |
T |
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| Q |
215 |
cttagtaatggaagaatattcaaagtatataca |
247 |
Q |
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| T |
33518430 |
cttagtaatgg-agaatattcaaagtatataca |
33518461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 55447144 - 55447217
Alignment:
| Q |
15 |
tggacatcattccacaaaatagaatcaaacaattcctgaacaaaaggaaaagaaacgagtcaaccaaacgtatt |
88 |
Q |
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| T |
55447144 |
tggacatcattccacaaaatagaatcaaacaattcctaaagaagaggatacgaaatgaatcaaccaaatgtatt |
55447217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 245
Target Start/End: Original strand, 55447265 - 55447323
Alignment:
| Q |
187 |
agtgataatagatatatcaagaatacatcttagtaatggaagaatattcaaagtatata |
245 |
Q |
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| T |
55447265 |
agtgataataggtatatcaagtatacttcttaaaaatggaagaatattcaaagtttata |
55447323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 7046023 - 7045986
Alignment:
| Q |
17 |
gacatcattccacaaaatagaatcaaacaattcctgaa |
54 |
Q |
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| T |
7046023 |
gacatcattccacaaaatagaatcaaacaattcctgaa |
7045986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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