View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9795A_low_22 (Length: 431)
Name: NF9795A_low_22
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 422; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 4 - 425
Target Start/End: Complemental strand, 33102508 - 33102087
Alignment:
| Q |
4 |
atgaacatgaagcttaccatcatcaccaacctcagcatctgtctcaagaaaatctctcccatcaagagaaacaacatcagaatcaaccttaaaggaaata |
103 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102508 |
atgaacatgaagcttaccatcatcaccaacctcagcatctgtctcaagaaaatctctcccatcaagagaaacaacatcagaatcaaccttaaaggaaata |
33102409 |
T |
|
| Q |
104 |
atagaagcagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaaagaaacaataacaaagtgtaccaaatgatacactgaa |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102408 |
atagaagcagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaaagaaacaataacaaagtgtaccaaatgatacactgaa |
33102309 |
T |
|
| Q |
204 |
gaaccacaacttgaaccataagggtaccggaatattcaccatacatagctatgagaagtggaattcccataaccaaagtgttgggtaatgttgaaagaga |
303 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102308 |
gaaccacaacttgaaccataagggtaccggaatattcaccatacatagctatgagaagtggaattcccataaccaaagtgttgggtaatgttgaaagaga |
33102209 |
T |
|
| Q |
304 |
gaagattgtgatcatccactctaagctaccattagctgtgaaattagtccaaattgtaagtgcaaggagcatgatgattttttgaagtgtatcagctgcg |
403 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102208 |
gaagattgtgatcatccactctaagctaccattagctgtgaaattagtccaaattgtaagtgcaaggagcatgatgattttttgaagtgtatcagctgcg |
33102109 |
T |
|
| Q |
404 |
atgaacctatagttcatggcat |
425 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
33102108 |
atgaacctatagttcatggcat |
33102087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 67 - 276
Target Start/End: Complemental strand, 52716731 - 52716522
Alignment:
| Q |
67 |
aagagaaacaacatcagaatcaaccttaaaggaaataatagaagcagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaa |
166 |
Q |
| |
|
|||||||||||| ||||||||||| || || || | |||||||| |||||||||||||||||||| | || ||||| |||||| | | ||| ||||| |
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| T |
52716731 |
aagagaaacaacgtcagaatcaactttgaatgatgttatagaagctgcagtttcaggaaactgttctgttataagaagtttagcagctctatattcaaac |
52716632 |
T |
|
| Q |
167 |
agaaacaataacaaagtgtaccaaatgatacactgaagaaccacaacttgaaccataagggtaccggaatattcaccatacatagctatgagaagtggaa |
266 |
Q |
| |
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| |||||| | | |||||||||||| | || |||||||| |||| ||| |||||||| | || || | ||||||||||||||| | | ||| || | |
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| T |
52716631 |
aaaaacaacataagagtgtaccaaataacactttgaagaacaacaatttgtaccataagatttcctgagaaatcaccatacatagctcttaaaagaggga |
52716532 |
T |
|
| Q |
267 |
ttcccataac |
276 |
Q |
| |
|
|||||||||| |
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|
| T |
52716531 |
ttcccataac |
52716522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 132
Target Start/End: Complemental strand, 52711419 - 52711358
Alignment:
| Q |
71 |
gaaacaacatcagaatcaaccttaaaggaaataatagaagcagcagtttcaggaaactgttc |
132 |
Q |
| |
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|||||||||||||||||||| || || || | |||||||| |||||||| ||||||||||| |
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|
| T |
52711419 |
gaaacaacatcagaatcaactttgaatgatgttatagaagctgcagtttctggaaactgttc |
52711358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 7 - 420
Target Start/End: Original strand, 10838577 - 10838990
Alignment:
| Q |
7 |
aacatgaagcttaccatcatcaccaacctcagcatctgtctcaagaaaatctctcccatcaagagaaacaacatcagaatcaaccttaaaggaaataata |
106 |
Q |
| |
|
|||||| | ||| |||||||||||||| ||||| || |||||||||||||| ||||| | || | ||| || ||||| ||||||||||||| || |
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| T |
10838577 |
aacatgtaacttcccatcatcaccaactgatgcatcagtttcaagaaaatctcttccatctaacgacataacgtccgaatcgaccttaaaggaaacgatg |
10838676 |
T |
|
| Q |
107 |
gaagcagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaaagaaacaataacaaagtgtaccaaatgatacactgaagaa |
206 |
Q |
| |
|
||||| || ||||| |||||||| ||||| |||| ||||||||||||||| |||||||||||||| | || | |||||||||||| ||||||||||||| |
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|
| T |
10838677 |
gaagccgcggtttctggaaactgctccatgattaaaagcttagcaccacggtactcaaaaagaaaaagcaaaagagtgtaccaaataatacactgaagaa |
10838776 |
T |
|
| Q |
207 |
ccacaacttgaaccataagggtaccggaatattcaccatacatagctatgagaagtggaattcccataaccaaagtgttgggtaatgttgaaagagagaa |
306 |
Q |
| |
|
|||||||||||||||| | | |||| ||||| |||||||||||||| || | | ||||||||||||||||||||||| || | |||||| | || || |
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|
| T |
10838777 |
ccacaacttgaaccattaagctacctgaataatcaccatacatagcaattaacaaaggaattcccataaccaaagtgttaggaagtgttgataatgaaaa |
10838876 |
T |
|
| Q |
307 |
gattgtgatcatccactctaagctaccattagctgtgaaattagtccaaattgtaagtgcaaggagcatgatgattttttgaagtgtatcagctgcgatg |
406 |
Q |
| |
|
|||||| |||||||| ||||| | ||||| ||||| ||||| | || |||||| | ||||||||||||||||||||||| || || || ||| |
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| T |
10838877 |
gattgttatcatccattctaaattgccatttttagtgaacaatgtccataatgaaagtgctactagcatgatgattttttgaagtgtgtctgcagctatg |
10838976 |
T |
|
| Q |
407 |
aacctatagttcat |
420 |
Q |
| |
|
||||| ||||||| |
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|
| T |
10838977 |
aacctgaagttcat |
10838990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 8 - 249
Target Start/End: Complemental strand, 34971296 - 34971055
Alignment:
| Q |
8 |
acatgaagcttaccatcatcaccaacctcagcatctgtctcaagaaaatctctcccatcaagagaaacaacatcagaatcaaccttaaaggaaataatag |
107 |
Q |
| |
|
|||||||| |||||||| |||||||| ||||| || || | ||| ||| | ||||| | ||||| ||||||||||||||| || || || ||||||| |
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|
| T |
34971296 |
acatgaagtttaccatcttcaccaacttcagcttcagtttgaagtggctctttaccatccaaagaaagaacatcagaatcaactttgaatgatataatag |
34971197 |
T |
|
| Q |
108 |
aagcagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaaagaaacaataacaaagtgtaccaaatgatacactgaagaac |
207 |
Q |
| |
|
|| ||||||| |||||||||||||| | ||| |||| | ||||||| | ||||||||| | |||||| | ||| || |||||||||||||| |||||||| |
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|
| T |
34971196 |
aaccagcagtatcaggaaactgttcaacaatgagaatcctagcacccctatactcaaacaaaaacaacatcaatgtataccaaatgatacattgaagaac |
34971097 |
T |
|
| Q |
208 |
cacaacttgaaccataagggtaccggaatattcaccatacat |
249 |
Q |
| |
|
|| | |||||||||||||||||| |||| ||||||||||| |
|
|
| T |
34971096 |
aactatttgaaccataagggtaccagaatcatcaccatacat |
34971055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 178 - 285
Target Start/End: Complemental strand, 25038959 - 25038852
Alignment:
| Q |
178 |
caaagtgtaccaaatgatacactgaagaaccacaacttgaaccataagggtaccggaatattcaccatacatagctatgagaagtggaattcccataacc |
277 |
Q |
| |
|
|||||| |||||||||||||| |||||||| |||| ||| ||||| | |||| ||| ||||||||||||| || | || | ||||||||||||||| |
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|
| T |
25038959 |
caaagtataccaaatgatacattgaagaacaacaatttgtaccattaaactacctgaaaattcaccatacattcctttaagtaaaggaattcccataacc |
25038860 |
T |
|
| Q |
278 |
aaagtgtt |
285 |
Q |
| |
|
|||||||| |
|
|
| T |
25038859 |
aaagtgtt |
25038852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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