View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_221 (Length: 250)
Name: NF9795A_low_221
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_221 |
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| [»] chr1 (4 HSPs) |
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| [»] scaffold0432 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 9805341 - 9805109
Alignment:
| Q |
18 |
gacatcattgaacaggataagatggaaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgatttttgttttattcggttattaaaata |
117 |
Q |
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| T |
9805341 |
gacatcattgaacaggacaagatggaaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgattttttttttattcggttattaaaata |
9805242 |
T |
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| Q |
118 |
tgtacttgtatttgttatttgctatttacttctagtacacattttatcttaaatttttgtacacataaatgcatcaaagggaaaaggaattcttgttgaa |
217 |
Q |
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| T |
9805241 |
tgtacttgtatttgttattttctatttacttctagtacacattttatattaaatttttgtacataggaatgcatcaaagggaaaaggaattcttgttgaa |
9805142 |
T |
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| Q |
218 |
caaaatgaaaagcaccagtgatgagcaggaaga |
250 |
Q |
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| T |
9805141 |
caaaatgaaaagcactggtgatgaggaggaaga |
9805109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 77 - 250
Target Start/End: Complemental strand, 9818211 - 9818036
Alignment:
| Q |
77 |
aaggtatattgtgattt--ttgttttattcggttattaaaatatgtacttgtatttgttatttgctatttacttctagtacacattttatcttaaatttt |
174 |
Q |
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| T |
9818211 |
aaggtatattgtgatttattttttttatacggttattaaattatgtacttgtatttgttattttctatttacttctagtacacaatttatattaaatttt |
9818112 |
T |
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| Q |
175 |
tgtacacataaatgcatcaaagggaaaaggaattcttgttgaacaaaatgaaaagcaccagtgatgagcaggaaga |
250 |
Q |
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| T |
9818111 |
tgtacacaagaatgcatcaaagggaaaaggaattcttgttgaacaaaatgaaaagcactagtgatgaggaggaaga |
9818036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 9806455 - 9806621
Alignment:
| Q |
18 |
gacatcattgaacaggataagatggaaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgatt--tttgttttattcggttattaaaa |
115 |
Q |
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| T |
9806455 |
gacatcattgaacaagacaagatggaaggtatttcacgtgctcacgaaaagggagaatcaaggtatattgtgatttatttattttagttggttattcaaa |
9806554 |
T |
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| Q |
116 |
tatgtacttgtatttgttatttgctatttacttctagtacacattttatcttaaatttttgtacaca |
182 |
Q |
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| T |
9806555 |
tatgtacttgtgtttgttattttctatttgtttctaatacacattttatatttaatttttgtacaca |
9806621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 9806621 - 9806653
Alignment:
| Q |
194 |
aagggaaaaggaattcttgttgaacaaaatgaa |
226 |
Q |
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| T |
9806621 |
aagggaaaaggaattattgttgaacaaaatgaa |
9806653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 15 - 229
Target Start/End: Complemental strand, 12285 - 12071
Alignment:
| Q |
15 |
atggacatcattgaacaggataagatggaaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgattt-ttgttttattcggttattaa |
113 |
Q |
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| T |
12285 |
atggacatcattgatcatgacaagatggaaggtattccatgtactcatgaaaagggggaatcaacgtattttgtgatttatttttttagttggttattca |
12186 |
T |
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| Q |
114 |
aatatgtacttgtatttgttatttgctatttacttctagtacacattttatcttaaatttttgtacacataaatgcatcaaagggaaaaggaattcttgt |
213 |
Q |
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| T |
12185 |
attatgtacttatgtttgttattttatatttacttctagtac-cattttatattaaattttggtacacgataatgcagcgaagggagaaggaattcttgt |
12087 |
T |
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| Q |
214 |
tgaacaaaatgaaaag |
229 |
Q |
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| T |
12086 |
tgaacaaaatgaaaag |
12071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 43 - 134
Target Start/End: Complemental strand, 2371144 - 2371052
Alignment:
| Q |
43 |
aaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgattt-ttgttttattcggttattaaaatatgtacttgtatttgtta |
134 |
Q |
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| T |
2371144 |
aaggtattccatgtactcgtgaaaaaggagaatcaaggtatattgtgatttatttttttagtcgattattcaaatatatacttatgtttgtta |
2371052 |
T |
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