View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9795A_low_23 (Length: 431)

Name: NF9795A_low_23
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9795A_low_23
NF9795A_low_23
[»] chr1 (1 HSPs)
chr1 (25-417)||(36314413-36314808)
[»] chr8 (28 HSPs)
chr8 (73-417)||(19345129-19345458)
chr8 (73-405)||(19503885-19504202)
chr8 (99-417)||(19390543-19390864)
chr8 (70-417)||(19410740-19411072)
chr8 (70-417)||(19457759-19458091)
chr8 (70-417)||(19522987-19523319)
chr8 (73-417)||(19592090-19592416)
chr8 (70-417)||(19469355-19469684)
chr8 (70-417)||(19540279-19540608)
chr8 (248-403)||(19337427-19337582)
chr8 (279-416)||(19468610-19468747)
chr8 (279-416)||(19555531-19555668)
chr8 (248-405)||(19355445-19355602)
chr8 (73-185)||(19337681-19337793)
chr8 (73-172)||(19355714-19355813)
chr8 (73-196)||(19468410-19468533)
chr8 (73-196)||(19555331-19555454)
chr8 (91-196)||(19404923-19405028)
chr8 (93-190)||(19376801-19376898)
chr8 (261-417)||(19376577-19376733)
chr8 (266-417)||(19172821-19172972)
chr8 (266-417)||(19287674-19287825)
chr8 (279-417)||(19404708-19404846)
chr8 (300-403)||(19370934-19371037)
chr8 (99-181)||(19172660-19172742)
chr8 (86-184)||(19287901-19287999)
chr8 (300-403)||(19341154-19341257)
chr8 (115-162)||(19371145-19371192)
[»] chr6 (2 HSPs)
chr6 (100-196)||(19543241-19543337)
chr6 (266-420)||(19543023-19543177)


Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 25 - 417
Target Start/End: Original strand, 36314413 - 36314808
Alignment:
Q  25 aaccttaaattacattccattcatatgatgatgcattgtccattttgctt---ggtgttcccacctttttctgaaaaacctcaccaggttccctacaagt 121  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  36314413 aaccataaattacattccattcatatgatgatgcattgtccattttgctttttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagt 36314512  T
Q  122 tggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgcatttccaatttctccactagcattgtcttcatcaccactt 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  36314513 tggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgcatttccaatttctccactagcattgtcttcaacaccactt 36314612  T
Q  222 gttaacttgcccttcgaggatagctcccatcgtataaacttcccatctttaacttcaaaagcgaaagaatcttcagtcttgttagaaacaataatgtact 321  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  36314613 gttaacttgcccttcgaggatagctcccatcatataaacttcccatctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtact 36314712  T
Q  322 gatacatatgttgaacattcattggaatgttctcgaacattccattgcttttaagttttccacttttccaatacactttgccgcgttttttgatgt 417  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  36314713 gatacatatgttgaacattcactggaatgttctcgaacattccattgcttttaagttttccacttttccaatacactttcccgcgttttttgatgt 36314808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 154; Significance: 2e-81; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 73 - 417
Target Start/End: Complemental strand, 19345458 - 19345129
Alignment:
Q  73 ttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataaca 172  Q
    |||||||||||||| ||||||||||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19345458 ttggtgttcccaccattttctgaaaaacctcaccattttccctacaatttggtatttcctcccatttttggcaccctccattgctattatatccataaca 19345359  T
Q  173 tatatctgcatttccaatttctccactagcattgtcttcatcaccacttgttaacttgcccttcgaggatagctcccatcgtataaacttcccatcttta 272  Q
     ||||||||||| ||||| ||||||            |||| |||   |  |||| | || ||||||| ||| | |||||||  ||||||||||||||||    
T  19345358 catatctgcattcccaatatctcca------------tcatgacc---tactaacctcccgttcgaggttagttgccatcgtgcaaacttcccatcttta 19345274  T
Q  273 acttcaaaagcgaaagaatcttcagtcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgcttt 372  Q
    ||||| |||||||||||||||||| |||||||||| ||||||||||||||||| ||| ||||||| ||| | |||||||||||||| ||||||||||| |    
T  19345273 acttcgaaagcgaaagaatcttcattcttgttagagacaataatgtactgatatatacgttgaactttcgtgggaatgttctcgaatattccattgctat 19345174  T
Q  373 taagttttccacttttccaatacactttgccgcgttttttgatgt 417  Q
    |||||||||| |||||||||||| || |||||| ||| |||||||    
T  19345173 taagttttccgcttttccaatacgctatgccgcttttcttgatgt 19345129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 73 - 405
Target Start/End: Original strand, 19503885 - 19504202
Alignment:
Q  73 ttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataaca 172  Q
    ||||||||||| |  ||||||||||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19503885 ttggtgttcccgcaattttctgaaaaacctcaccattttccctacaatttggtatttcctcccatttttggcaccctccattgctattatatccataaca 19503984  T
Q  173 tatatctgcatttccaatttctccactagcattgtcttcatcaccacttgttaacttgcccttcgaggatagctcccatcgtataaacttcccatcttta 272  Q
     ||||||||||| ||||| ||||||            |||| |||   |  |||| | |||||||||| ||| | |||||||  ||||||||||||||||    
T  19503985 catatctgcattcccaatctctcca------------tcatgacc---tactaacctccccttcgaggttagttgccatcgtgcaaacttcccatcttta 19504069  T
Q  273 acttcaaaagcgaaagaatcttcagtcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgcttt 372  Q
    ||||| |||||||||||||||||| |||||||||| ||||||||||||||||| ||| ||||||| ||  | |||||||||||||| |||||||||||||    
T  19504070 acttcgaaagcgaaagaatcttcattcttgttagagacaataatgtactgatatatacgttgaacttttgtgggaatgttctcgaatattccattgcttt 19504169  T
Q  373 taagttttccacttttccaatacactttgccgc 405  Q
    |||||||||| |||||||||| |||||||||||    
T  19504170 taagttttccgcttttccaatgcactttgccgc 19504202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 99 - 417
Target Start/End: Complemental strand, 19390864 - 19390543
Alignment:
Q  99 acctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgcatttccaatttctccac 198  Q
    ||||||| ||| ||||| ||||||||||||||||||||||||||||||||  |||  |||||||||||||||||  ||||||||||  |||| ||| |||    
T  19390864 acctcacgagggtccctgcaagttggtatatcctcccatttttggcacccggcatcactattatatccataacacttatctgcattagcaatgtctgcac 19390765  T
Q  199 tagcattgtct---tcatcaccacttgttaacttgcccttcgaggatagctcccatcgtataaacttcccatctttaacttcaaaagcgaaagaatcttc 295  Q
    ||  | | |||   |||||| ||||| ||||| | ||||||||||  |    |||||||||||||||||||||||||||||| ||||| |||||||||||    
T  19390764 tataaatctctccctcatcagcacttattaacctccccttcgaggtaatgaaccatcgtataaacttcccatctttaacttcgaaagcaaaagaatcttc 19390665  T
Q  296 agtcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgcttttaagttttccacttttccaatac 395  Q
    |  ||||||||| ||||||||||| ||||| ||| ||||||||||||  |||||||||||||| |  |||||||||||||||||||| ||||||||||||    
T  19390664 atccttgttagagacaataatgtattgatatatacgttgaacattcaccggaatgttctcgaataaaccattgcttttaagttttccgcttttccaatac 19390565  T
Q  396 actttgccgcgttttttgatgt 417  Q
    |||||||||||||| |||||||    
T  19390564 actttgccgcgtttcttgatgt 19390543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 70 - 417
Target Start/End: Complemental strand, 19411072 - 19410740
Alignment:
Q  70 tgcttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccata 169  Q
    |||||||| ||||| ||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||| ||    
T  19411072 tgcttggtcttcccgcctttttctgaaacatctcaccaggttccctgcaagttggtatatcctcccatttttggcaccctccatcactattatatccgta 19410973  T
Q  170 acatatatctgcatttccaatttctccactagcattgtcttcatcaccacttgttaacttgcccttcgaggatagctcccatcgtataaacttcccatct 269  Q
    ||| |||||||||||  |||| | ||||            ||||||||   |  |||||| |||||||||||||| |||||| ||  |||||||||||||    
T  19410972 acacatatctgcattagcaatatatcca------------tcatcacc---tactaacttccccttcgaggatagttcccattgtgcaaacttcccatct 19410888  T
Q  270 ttaacttcaaaagcgaaagaatcttcagtcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgc 369  Q
    |||||||| || | |||||||||||||  ||||||||| |||||||||||||||||| ||  |||||||||    ||||| |||||||| | ||||||||    
T  19410887 ttaacttcgaacgtgaaagaatcttcatccttgttagagacaataatgtactgatacctactttgaacattggccggaatattctcgaataatccattgc 19410788  T
Q  370 ttttaagttttccacttttccaatacactttgccgcgttttttgatgt 417  Q
    ||||||||||||| |||||||||||||||||||||| ||| |||||||    
T  19410787 ttttaagttttccgcttttccaatacactttgccgcttttcttgatgt 19410740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 70 - 417
Target Start/End: Complemental strand, 19458091 - 19457759
Alignment:
Q  70 tgcttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccata 169  Q
    |||||||| ||||| ||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||| ||    
T  19458091 tgcttggtcttcccgcctttttctgaaacatctcaccaggttccctgcaagttggtatatcctcccatttttggcaccctccatcactattatatccgta 19457992  T
Q  170 acatatatctgcatttccaatttctccactagcattgtcttcatcaccacttgttaacttgcccttcgaggatagctcccatcgtataaacttcccatct 269  Q
    ||| |||||||||||  |||| | ||||            ||||||||   |  |||||| |||||||||||||| |||||| ||  |||||||||||||    
T  19457991 acacatatctgcattagcaatatatcca------------tcatcacc---tactaacttccccttcgaggatagttcccattgtgcaaacttcccatct 19457907  T
Q  270 ttaacttcaaaagcgaaagaatcttcagtcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgc 369  Q
    |||||||| || | |||||||||||||  ||||||||| |||||||||||||||||| ||  |||||||||    ||||| |||||||| | ||||||||    
T  19457906 ttaacttcgaacgtgaaagaatcttcatccttgttagagacaataatgtactgatacctactttgaacattggccggaatattctcgaataatccattgc 19457807  T
Q  370 ttttaagttttccacttttccaatacactttgccgcgttttttgatgt 417  Q
    ||||||||||||| |||||||||||||||||||||| ||| |||||||    
T  19457806 ttttaagttttccgcttttccaatacactttgccgcttttcttgatgt 19457759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 70 - 417
Target Start/End: Original strand, 19522987 - 19523319
Alignment:
Q  70 tgcttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccata 169  Q
    |||||||| ||||| ||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||| ||    
T  19522987 tgcttggtcttcccgcctttttctgaaacatctcaccaggttccctgcaagttggtatatcctcccatttttggcaccctccatcactattatatccgta 19523086  T
Q  170 acatatatctgcatttccaatttctccactagcattgtcttcatcaccacttgttaacttgcccttcgaggatagctcccatcgtataaacttcccatct 269  Q
    ||| |||||||||||  |||| | ||||            ||||||||   |  |||||| |||||||||||||| |||||| ||  |||||||||||||    
T  19523087 acacatatctgcattagcaatatatcca------------tcatcacc---tactaacttccccttcgaggatagttcccattgtgcaaacttcccatct 19523171  T
Q  270 ttaacttcaaaagcgaaagaatcttcagtcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgc 369  Q
    |||||||| || | |||||||||||||  ||||||||| |||||||||||||||||| ||  |||||||||    ||||| |||||||| | ||||||||    
T  19523172 ttaacttcgaacgtgaaagaatcttcatccttgttagagacaataatgtactgatacctactttgaacattggccggaatattctcgaataatccattgc 19523271  T
Q  370 ttttaagttttccacttttccaatacactttgccgcgttttttgatgt 417  Q
    ||||||||||||| |||||||||||||||||||||| ||| |||||||    
T  19523272 ttttaagttttccgcttttccaatacactttgccgcttttcttgatgt 19523319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 73 - 417
Target Start/End: Complemental strand, 19592416 - 19592090
Alignment:
Q  73 ttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataaca 172  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||  ||||   |||| |||||    
T  19592416 ttggtgttcccgcctttttctgaaaaacctcaccaggttccctgcaagttggtatatcctcccatttttggcatcctccatcactat---atccgtaaca 19592320  T
Q  173 tatatctgcatttccaatttctccactagcattgtcttcatcaccacttgttaacttgcccttcgaggatagctcccatcgtataaacttcccatcttta 272  Q
     |||||||||||  |||| | ||||            ||||||||   |  |||| | || ||||||  ||| |||||| ||  ||||||||||||||||    
T  19592319 catatctgcattagcaatatatcca------------tcatcacc---tactaacctccctttcgagattagttcccattgtgcaaacttcccatcttta 19592235  T
Q  273 acttcaaaagcgaaagaatcttcagtcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgcttt 372  Q
    ||||| || | |||||||||||||  ||||||||| |||||||||||||||||| ||| |||||||||    ||||| |||||||| | |||||||||||    
T  19592234 acttcgaacgtgaaagaatcttcatccttgttagagacaataatgtactgatacctattttgaacattggccggaatattctcgaataatccattgcttt 19592135  T
Q  373 taagttttccacttttccaatacactttgccgcgttttttgatgt 417  Q
    |||||||||| |||||||||||||||||||||| ||| |||||||    
T  19592134 taagttttccgcttttccaatacactttgccgcttttcttgatgt 19592090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 70 - 417
Target Start/End: Original strand, 19469355 - 19469684
Alignment:
Q  70 tgcttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccata 169  Q
    |||||||| ||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||  ||||   |||| ||    
T  19469355 tgcttggtcttcccgcctttttctgaaacacctcaccaggttccctgcaagttggtatatcctcccatttttggcatcctccatcactat---atccgta 19469451  T
Q  170 acatatatctgcatttccaatttctccactagcattgtcttcatcaccacttgttaacttgcccttcgaggatagctcccatcgtataaacttcccatct 269  Q
    ||| |||||||||||  |||| | ||||            ||||||||   |  |||| | || ||||||  ||| |||||| ||  |||||||||||||    
T  19469452 acacatatctgcattagcaatatatcca------------tcatcacc---tactaacctccctttcgagattagttcccattgtgcaaacttcccatct 19469536  T
Q  270 ttaacttcaaaagcgaaagaatcttcagtcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgc 369  Q
    |||||||| || | |||||||||||||  ||||||||| |||||||||||||||||| ||| |||||||||    ||||| |||||||| | ||||||||    
T  19469537 ttaacttcgaacgtgaaagaatcttcatccttgttagagacaataatgtactgatacctattttgaacattggccggaatattctcgaataatccattgc 19469636  T
Q  370 ttttaagttttccacttttccaatacactttgccgcgttttttgatgt 417  Q
    ||||||||||||| |||||||||||||||||||||| ||| |||||||    
T  19469637 ttttaagttttccgcttttccaatacactttgccgcttttcttgatgt 19469684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 70 - 417
Target Start/End: Original strand, 19540279 - 19540608
Alignment:
Q  70 tgcttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccata 169  Q
    |||||||| ||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||  ||||   |||| ||    
T  19540279 tgcttggtcttcccgcctttttctgaaacacctcaccaggttccctgcaagttggtatatcctcccatttttggcatcctccatcactat---atccgta 19540375  T
Q  170 acatatatctgcatttccaatttctccactagcattgtcttcatcaccacttgttaacttgcccttcgaggatagctcccatcgtataaacttcccatct 269  Q
    ||| |||||||||||  |||| | ||||            ||||||||   |  |||| | || ||||||  ||| |||||| ||  |||||||||||||    
T  19540376 acacatatctgcattagcaatatatcca------------tcatcacc---tactaacctccctttcgagattagttcccattgtgcaaacttcccatct 19540460  T
Q  270 ttaacttcaaaagcgaaagaatcttcagtcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgc 369  Q
    |||||||| || | |||||||||||||  ||||||||| |||||||||||||||||| ||| |||||||||    ||||| |||||||| | ||||||||    
T  19540461 ttaacttcgaacgtgaaagaatcttcatccttgttagagacaataatgtactgatacctattttgaacattggccggaatattctcgaataatccattgc 19540560  T
Q  370 ttttaagttttccacttttccaatacactttgccgcgttttttgatgt 417  Q
    ||||||||||||| |||||||||||||||||||||| ||| |||||||    
T  19540561 ttttaagttttccgcttttccaatacactttgccgcttttcttgatgt 19540608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 248 - 403
Target Start/End: Complemental strand, 19337582 - 19337427
Alignment:
Q  248 ccatcgtataaacttcccatctttaacttcaaaagcgaaagaatcttcagtcttgttagaaacaataatgtactgatacatatgttgaacattcattgga 347  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||  ||||||||| |||||||||||||| || ||| ||||||| |||   |||    
T  19337582 ccatcgtataaatttcccatctttaacttcaaaagcaaaagaatcttcatccttgttagacacaataatgtactggtatatacgttgaactttcgcagga 19337483  T
Q  348 atgttctcgaacattccattgcttttaagttttccacttttccaatacactttgcc 403  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  19337482 atgttctcgaacattccattgcttttgagttttccacttttccaatgcactttgcc 19337427  T

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Target: chr8; HSP #11
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 279 - 416
Target Start/End: Original strand, 19468610 - 19468747
Alignment:
Q  279 aaagcgaaagaatcttcagtctt-gttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgcttttaagt 377  Q
    |||| |||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||  ||||| |||||||| | ||||||||||||||||    
T  19468610 aaagtgaaagaatcttc-gtctttgttagagacaataatgtactgatacatatgttgaacattcaccggaatattctcgaataatccattgcttttaagt 19468708  T
Q  378 tttccacttttccaatacactttgccgcgttttttgatg 416  Q
    ||||| |||||||||||||||||||||| ||| ||||||    
T  19468709 tttccgcttttccaatacactttgccgcttttcttgatg 19468747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 279 - 416
Target Start/End: Original strand, 19555531 - 19555668
Alignment:
Q  279 aaagcgaaagaatcttcagtctt-gttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgcttttaagt 377  Q
    |||| |||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||  ||||| |||||||| | ||||||||||||||||    
T  19555531 aaagtgaaagaatcttc-gtctttgttagagacaataatgtactgatacatatgttgaacattcaccggaatattctcgaataatccattgcttttaagt 19555629  T
Q  378 tttccacttttccaatacactttgccgcgttttttgatg 416  Q
    ||||| |||||||||||||||||||||| ||| ||||||    
T  19555630 tttccgcttttccaatacactttgccgcttttcttgatg 19555668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 248 - 405
Target Start/End: Complemental strand, 19355602 - 19355445
Alignment:
Q  248 ccatcgtataaacttcccatctttaacttcaaaagcgaaagaatcttcagtcttgttagaaacaataatgtactgatacatatgttgaacattcattgga 347  Q
    |||||||||||| |||||||| |||||||| ||||| ||||||||||||  ||||||||| |||||||||||| |||| |||  |||||| |||  ||||    
T  19355602 ccatcgtataaaattcccatcattaacttcgaaagcaaaagaatcttcatccttgttagacacaataatgtaccgatatatactttgaactttcgctgga 19355503  T
Q  348 atgttctcgaacattccattgcttttaagttttccacttttccaatacactttgccgc 405  Q
    ||||||||||| |||||||| ||| |||||||||| |||||||||| |||||||||||    
T  19355502 atgttctcgaatattccattacttctaagttttccgcttttccaatgcactttgccgc 19355445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 73 - 185
Target Start/End: Complemental strand, 19337793 - 19337681
Alignment:
Q  73 ttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataaca 172  Q
    ||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  19337793 ttggtcttcccaccattttccgaaaaacctcaccaggttccctacaatttggtatttcctcccatttttggcaccctccatcgctattatatccataaca 19337694  T
Q  173 tatatctgcattt 185  Q
     || |||||||||    
T  19337693 catgtctgcattt 19337681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 73 - 172
Target Start/End: Complemental strand, 19355813 - 19355714
Alignment:
Q  73 ttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataaca 172  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  19355813 ttggtcttcccacctttttccgaaaaacctcaccaggttccctacaatttggtatttcctcccatttttggcaccctccatcgctattatatccataaca 19355714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 73 - 196
Target Start/End: Original strand, 19468410 - 19468533
Alignment:
Q  73 ttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataaca 172  Q
    ||||| ||||| |||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||    
T  19468410 ttggtcttcccgcctttttctgaaacccctcaccaggtgccctacaagttggtatatcctcccatttttggcatcctccatcactattatatccataaca 19468509  T
Q  173 tatatctgcatttccaatttctcc 196  Q
     |||||||||||| |||| |||||    
T  19468510 catatctgcatttacaatatctcc 19468533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 73 - 196
Target Start/End: Original strand, 19555331 - 19555454
Alignment:
Q  73 ttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataaca 172  Q
    ||||| ||||| |||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||    
T  19555331 ttggtcttcccgcctttttctgaaacccctcaccaggtgccctacaagttggtatatcctcccatttttggcatcctccatcactattatatccataaca 19555430  T
Q  173 tatatctgcatttccaatttctcc 196  Q
     |||||||||||| |||| |||||    
T  19555431 catatctgcatttacaatatctcc 19555454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 91 - 196
Target Start/End: Complemental strand, 19405028 - 19404923
Alignment:
Q  91 tctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgcatttccaat 190  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |  ||||||||||||||||| |||||||||||||||||    
T  19405028 tctgaaacacctcaccaggttccctacaagttggtatatcctcccacttttggcaccctccgtccctattatatccataacacatatctgcatttccaat 19404929  T
Q  191 ttctcc 196  Q
     |||||    
T  19404928 atctcc 19404923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 93 - 190
Target Start/End: Complemental strand, 19376898 - 19376801
Alignment:
Q  93 tgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgcatttccaat 190  Q
    ||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||    
T  19376898 tgaaacacctcaccaggttccctgcaagctggtatatcctcccatttttggcaccctcgatcactattatatccataacatatatctgcatttccaat 19376801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 261 - 417
Target Start/End: Complemental strand, 19376733 - 19376577
Alignment:
Q  261 ttcccatctttaacttcaaaagcgaaagaatcttcagtcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaaca 360  Q
    |||| |||||||| |||||||   || |||||||||  ||||||||| ||||| |||||| ||||||||| |||||||||    ||||| |||||||| |    
T  19376733 ttccgatctttaatttcaaaactaaaggaatcttcatccttgttagagacaatgatgtaccgatacatattttgaacattggccggaatattctcgaata 19376634  T
Q  361 ttccattgcttttaagttttccacttttccaatacactttgccgcgttttttgatgt 417  Q
     ||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||    
T  19376633 atccattgcttttaagttttccgcttttccaatacactttgccgcttttcttgatgt 19376577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 266 - 417
Target Start/End: Original strand, 19172821 - 19172972
Alignment:
Q  266 atctttaacttcaaaagcgaaagaatcttcagtcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattcca 365  Q
    |||||| | ||| |||| ||| || ||||||  ||||||||| ||||||||||| ||||||| ||||||||| |||| | ||||||||| ||| | ||||    
T  19172821 atctttgatttcgaaagtgaaggagtcttcatccttgttagagacaataatgtattgatacacatgttgaactttcactagaatgttcttgaataatcca 19172920  T
Q  366 ttgcttttaagttttccacttttccaatacactttgccgcgttttttgatgt 417  Q
    ||||| ||||||||||| |||||||||||||||||||||||||  |||||||    
T  19172921 ttgctgttaagttttccgcttttccaatacactttgccgcgttgcttgatgt 19172972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 266 - 417
Target Start/End: Complemental strand, 19287825 - 19287674
Alignment:
Q  266 atctttaacttcaaaagcgaaagaatcttcagtcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattcca 365  Q
    |||||| | ||| |||| ||| || ||||||  ||||||||| ||||||||||| ||||||| | ||||||| |||| ||||||||||||||| |  |||    
T  19287825 atctttgatttcgaaagtgaaggagtcttcatccttgttagagacaataatgtattgatacacacgttgaactttcactggaatgttctcgaataaacca 19287726  T
Q  366 ttgcttttaagttttccacttttccaatacactttgccgcgttttttgatgt 417  Q
    |||| | || ||||||| |||||||||||||||||||||||||  |||||||    
T  19287725 ttgcgtctacgttttccgcttttccaatacactttgccgcgttgcttgatgt 19287674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 279 - 417
Target Start/End: Complemental strand, 19404846 - 19404708
Alignment:
Q  279 aaagcgaaagaatcttcagtcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgcttttaagtt 378  Q
    |||| |||||||||||||  ||||||||| |||||| |||| |||||||||  |||||||||    ||||| |||||||| | ||||| |||||||||||    
T  19404846 aaagtgaaagaatcttcatccttgttagagacaatagtgtattgatacatagtttgaacattggccggaatattctcgaataatccatcgcttttaagtt 19404747  T
Q  379 ttccacttttccaatacactttgccgcgttttttgatgt 417  Q
    |||| |||||||||||||||||||| | ||| |||||||    
T  19404746 ttccgcttttccaatacactttgcctcttttcttgatgt 19404708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 300 - 403
Target Start/End: Complemental strand, 19371037 - 19370934
Alignment:
Q  300 ttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgcttttaagttttccacttttccaatacactt 399  Q
    |||||||| ||||| |||||  |||||| |||||| ||||||  ||||||||||||||| | |||||||||| ||||||||||||||||||||| |||||    
T  19371037 ttgttagagacaatcatgtatcgatacacatgttggacattctctggaatgttctcgaataatccattgcttctaagttttccacttttccaatgcactt 19370938  T
Q  400 tgcc 403  Q
    ||||    
T  19370937 tgcc 19370934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 99 - 181
Target Start/End: Original strand, 19172660 - 19172742
Alignment:
Q  99 acctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgc 181  Q
    |||||||| |||||||| || |||||||||||||||||||||||||||||||||| | ||||||| |||||||| ||||||||    
T  19172660 acctcaccgggttccctgcaggttggtatatcctcccatttttggcaccctccatcggtattatagccataacacatatctgc 19172742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 86 - 184
Target Start/End: Complemental strand, 19287999 - 19287901
Alignment:
Q  86 ctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgcatt 184  Q
    |||||| ||||| ||||||||| ||||||| |||||||| |||||||||||||||||||||||| |||   ||||||||||||||||  ||||||||||    
T  19287999 ctttttttgaaagacctcaccacgttccctgcaagttggcatatcctcccatttttggcacccttcatcattattatatccataacacttatctgcatt 19287901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 300 - 403
Target Start/End: Complemental strand, 19341257 - 19341154
Alignment:
Q  300 ttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgcttttaagttttccacttttccaatacactt 399  Q
    |||||||| ||||| |||||  |||||| |||||| ||||||  | ||||||||||||| | ||||||||||  |||||||||||||||||||| |||||    
T  19341257 ttgttagagacaatcatgtatcgatacacatgttggacattctctagaatgttctcgaataatccattgcttccaagttttccacttttccaatgcactt 19341158  T
Q  400 tgcc 403  Q
    ||||    
T  19341157 tgcc 19341154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 162
Target Start/End: Complemental strand, 19371192 - 19371145
Alignment:
Q  115 tacaagttggtatatcctcccatttttggcaccctccattgctattat 162  Q
    ||||||||||||||| ||||||||||||||| || ||||| |||||||    
T  19371192 tacaagttggtatatactcccatttttggcatccaccattactattat 19371145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 100 - 196
Target Start/End: Complemental strand, 19543337 - 19543241
Alignment:
Q  100 cctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgcatttccaatttctcc 196  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||| |  |||||||||||||| |||||    
T  19543337 cctcaccaggttccctacaacttggtatatcctcccatttttggcaccctccgttgatattatatccataacacaagtctgcatttccaatatctcc 19543241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 266 - 420
Target Start/End: Complemental strand, 19543177 - 19543023
Alignment:
Q  266 atctttaacttcaaaagcgaaagaatcttcagtcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattcca 365  Q
    |||||||| || |||||  || |||||||||   || ||||||||||||||||| | ||||| | |||||||||||   || |||||| |||| |  |||    
T  19543177 atctttaattttaaaagtaaaggaatcttcatctttcttagaaacaataatgtattcatacacacgttgaacattcgccggtatgttcacgaataaccca 19543078  T
Q  366 ttgcttttaagttttccacttttccaatacactttgccgcgttttttgatgtcca 420  Q
    || ||| |||||||||| |||||||||||||||||||||| ||| ||||| ||||    
T  19543077 tttcttctaagttttccgcttttccaatacactttgccgcttttcttgatttcca 19543023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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