View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_237 (Length: 249)
Name: NF9795A_low_237
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_237 |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 8 - 242
Target Start/End: Complemental strand, 16898931 - 16898697
Alignment:
| Q |
8 |
gcgggttgaactattgatttacgtaattggaagtaaccaattaggtttacggcgaaacctatcaatcgatcacggatccaatttgagtacctctacagga |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16898931 |
gcggtttgaactattgatttacgtaattggaagtaaccaattaggtttacggcgaaacctatcaatcgatcacggatccaatttgagtacctctacagga |
16898832 |
T |
|
| Q |
108 |
tagacttcaacagaaaactgaagagtaacggcagcaagtgattgagttcagtagtttctcatataaaattattgaccctaaagatatagtaatatggaga |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16898831 |
tagacttcaacagaaaactgaagagtaacggcagcaagtgattgagttcagtagtttctcatataaaattattgaccctaaagatatagtaatatggaga |
16898732 |
T |
|
| Q |
208 |
agacaaaattgtttcaagcaccgacagaacacgaa |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
16898731 |
agacaaaattgtttcaagcaccgacagaacacgaa |
16898697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 8 - 242
Target Start/End: Complemental strand, 18347446 - 18347212
Alignment:
| Q |
8 |
gcgggttgaactattgatttacgtaattggaagtaaccaattaggtttacggcgaaacctatcaatcgatcacggatccaatttgagtacctctacagga |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18347446 |
gcggtttgaactattgatttacgtaattggaagtaaccaattaggtttacggcgaaacctatcaatcgatcacggatccaatttgagtacctctacagga |
18347347 |
T |
|
| Q |
108 |
tagacttcaacagaaaactgaagagtaacggcagcaagtgattgagttcagtagtttctcatataaaattattgaccctaaagatatagtaatatggaga |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18347346 |
tagacttcaacagaaaactgaagagtaacggcagcaagtgattgagttcggtagtttctcatataaaattattgaccctaaagatatagtaatatggaga |
18347247 |
T |
|
| Q |
208 |
agacaaaattgtttcaagcaccgacagaacacgaa |
242 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
18347246 |
agacaaaattgtttcaagcaccgacagaacacgaa |
18347212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 34689095 - 34689050
Alignment:
| Q |
173 |
aaattattgaccctaaagatatagtaatatggagaagacaaaattg |
218 |
Q |
| |
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|||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
34689095 |
aaattattgaccttctagatatagtaatatggagaagacaaaattg |
34689050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 8 - 242
Target Start/End: Original strand, 13237045 - 13237279
Alignment:
| Q |
8 |
gcgggttgaactattgatttacgtaattggaagtaaccaattaggtttacggcgaaacctatcaatcgatcacggatccaatttgagtacctctacagga |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13237045 |
gcggtttgaactattgatttacgtaattggaagtaaccaattaggtttacggcgaaacctatcaatcgatcacggatccaatttgagtacctctacagga |
13237144 |
T |
|
| Q |
108 |
tagacttcaacagaaaactgaagagtaacggcagcaagtgattgagttcagtagtttctcatataaaattattgaccctaaagatatagtaatatggaga |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13237145 |
tagacttcaacagaaaactgaagagtaacggcagcaagtgattgagttcggtagtttctcatataaaattattgaccctaaagatatagtaatatggaga |
13237244 |
T |
|
| Q |
208 |
agacaaaattgtttcaagcaccgacagaacacgaa |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
13237245 |
agacaaaattgtttcaagcaccgacagaacacgaa |
13237279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 36 - 242
Target Start/End: Original strand, 41641583 - 41641789
Alignment:
| Q |
36 |
ggaagtaaccaattaggtttacggcgaaacctatcaatcgatcacggatccaatttgagtacctctacaggatagacttcaacagaaaactgaagagtaa |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41641583 |
ggaagtaaccaattaggtttacggcgaaacctatcaatcgatcacggatccaatttgagtacctctacaggatagacttcaacagaaaactgaagagtaa |
41641682 |
T |
|
| Q |
136 |
cggcagcaagtgattgagttcagtagtttctcatataaaattattgaccctaaagatatagtaatatggagaagacaaaattgtttcaagcaccgacaga |
235 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41641683 |
cggcagcaagtgattgagttcggtagtttctcatataaaattattgaccctaaagatatagtaatatggagaagacaaaattgtttcaagcaccgacaga |
41641782 |
T |
|
| Q |
236 |
acacgaa |
242 |
Q |
| |
|
||||||| |
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|
| T |
41641783 |
acacgaa |
41641789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 13 - 242
Target Start/End: Original strand, 33064717 - 33064946
Alignment:
| Q |
13 |
ttgaactattgatttacgtaattggaagtaaccaattaggtttacggcgaaacctatcaatcgatcacggatccaatttgagtacctctacaggatagac |
112 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33064717 |
ttgaactattgatttatgtaattggaagtaaccaattaagattacggcgaaatctatcaatcgatcacggatccaatttgagtacctctaccggatagac |
33064816 |
T |
|
| Q |
113 |
ttcaacagaaaactgaagagtaacggcagcaagtgattgagttcagtagtttctcatataaaattattgaccctaaagatatagtaatatggagaagaca |
212 |
Q |
| |
|
|||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| || |
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|
| T |
33064817 |
ttcaacagaaaactaaagagtaacgacaataagtgattgagttcagtagtttctcatataaattttttgaccctaaagatatagtaatatggagaaggca |
33064916 |
T |
|
| Q |
213 |
aaattgtttcaagcaccgacagaacacgaa |
242 |
Q |
| |
|
||||||||||||||||||||| |||||||| |
|
|
| T |
33064917 |
aaattgtttcaagcaccgacaaaacacgaa |
33064946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 8 - 242
Target Start/End: Original strand, 198563 - 198797
Alignment:
| Q |
8 |
gcgggttgaactattgatttacgtaattggaagtaaccaattaggtttacggcgaaacctatcaatcgatcacggatccaatttgagtacctctacagga |
107 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||| ||||||||| ||| |
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|
| T |
198563 |
gcggtttgaactattgatttacgtaattggaagtaaccaattaggtttacgacgaaacctagaaatcgatcactgatccaatttgactacctctacggga |
198662 |
T |
|
| Q |
108 |
tagacttcaacagaaaactgaagagtaacggcagcaagtgattgagttcagtagtttctcatataaaattattgaccctaaagatatagtaatatggaga |
207 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||| |||||| |||||||||||| |
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|
| T |
198663 |
tagacctcaacagaaaactgttgagtaacggcagcaagtgattgagttcagtagttcctcatagaaaattattgactctagagatatggtaatatggaga |
198762 |
T |
|
| Q |
208 |
agacaaaattgtttcaagcaccgacagaacacgaa |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
198763 |
agacaaaattgtttcaagcaccgacagaacacgaa |
198797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 95 - 237
Target Start/End: Complemental strand, 282366 - 282224
Alignment:
| Q |
95 |
tacctctacaggatagacttcaacagaaaactgaagagtaacggcagcaagtgattgagttcagtagtttctcatataaaattattgaccctaaagatat |
194 |
Q |
| |
|
||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||| |||||| |
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|
| T |
282366 |
tacctctacgggatagacctcaacagaaaactgttgagtaacggcagcaagtgattgagttcagtagttcctcatagaaaattattgactctagagatat |
282267 |
T |
|
| Q |
195 |
agtaatatggagaagacaaaattgtttcaagcaccgacagaac |
237 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
282266 |
ggtaatatggagaagacaaaattgtttgaagcacgcacagaac |
282224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 150 - 198
Target Start/End: Original strand, 4162364 - 4162412
Alignment:
| Q |
150 |
tgagttcagtagtttctcatataaaattattgaccctaaagatatagta |
198 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4162364 |
tgagttcagttgtttctcatataaaattattgaccctaaagatatagta |
4162412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 195
Target Start/End: Complemental strand, 4174896 - 4174851
Alignment:
| Q |
150 |
tgagttcagtagtttctcatataaaattattgaccctaaagatata |
195 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4174896 |
tgagttcagttgtttctcatataaaattattgaccctaaagatata |
4174851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 33420411 - 33420354
Alignment:
| Q |
8 |
gcgggttgaactattgattta-cgtaattggaagtaaccaattaggtttacggcgaaa |
64 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33420411 |
gcggtttgaactattgatttatcgtaattggaagtaaccaattagatttacggcgaaa |
33420354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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