View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_238 (Length: 249)
Name: NF9795A_low_238
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_238 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 32853658 - 32853424
Alignment:
| Q |
1 |
tgcaaataagttattctctactatgattaatgatnnnnnnntctggtgagatatggtttttagatagtggctgtagcaatcatgtaacagggaatcaaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32853658 |
tgcaaataagttattctctactatgattaatgatcaaaaa-tctggtgagatgtggtttttagatagtggctgcagcaatcatgtaacagggaatcaaac |
32853560 |
T |
|
| Q |
101 |
catatttaaagagctaaataaaaattattcttctcatgttgaacttggtgatggaaaacatgttaaaattgaaggaaagggggttatagcagttcatact |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32853559 |
catatttgaagagctaaataaaaattattcttctcatgttgaacttggtgatggaaaacatgttaaaattgaaggaaagggggttatagcagttcatact |
32853460 |
T |
|
| Q |
201 |
agtcaaggcaacaaacaattcattcatgatgtccat |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
32853459 |
agtcaaggcaacaaacaattcattcatgatgtccat |
32853424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 37176794 - 37176560
Alignment:
| Q |
1 |
tgcaaataagttattctctactatgattaatgatnnnnnnntctggtgagatatggtttttagatagtggctgtagcaatcatgtaacagggaatcaaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
37176794 |
tgcaaataagttattctctactatgattaatgataaaaaa-tctggtgagatgtggtttttagatagtggttgtagcaatcatgtaacagggaatcaaac |
37176696 |
T |
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| Q |
101 |
catatttaaagagctaaataaaaattattcttctcatgttgaacttggtgatggaaaacatgttaaaattgaaggaaagggggttatagcagttcatact |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37176695 |
catatttgaagagctaaataaaaattattcttctcatgttgaacttggtgatggaaaacatgttaaaattgaaggaaagggggttatagcagttcatact |
37176596 |
T |
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| Q |
201 |
agtcaaggcaacaaacaattcattcatgatgtccat |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
37176595 |
agtcaaggcaacaaacaattcattcatgatgtccat |
37176560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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