View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_24 (Length: 431)
Name: NF9795A_low_24
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 4 - 413
Target Start/End: Complemental strand, 14321438 - 14321030
Alignment:
| Q |
4 |
tgtgtcgcctttctaccggtggtaaaagcatcggctacttcccaaccttcttcggttgtcctcttagatgtagtcgacttaaaggtttgtcaagggtcgt |
103 |
Q |
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| T |
14321438 |
tgtgtcgcctttctaccggtggtacaagcatcggctacttcccaaccttcttcggttgtcctcttagatgtcgtcgacttaaaggtttgtcaagggtcgc |
14321339 |
T |
|
| Q |
104 |
gatgcggtgttgtatctagtttatggatggttggtggcaatttgttttaagatctaccgcctccgtgcttgtgggttggtgttttttatattagtcgcgg |
203 |
Q |
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|||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||| ||||| ||||||| |
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| T |
14321338 |
gatgcggtgttgtatctagtttctggatggttggtgacaatttgttttaagatctaccacctccgtgccggtgggttggtgtttttgatattcgtcgcgg |
14321239 |
T |
|
| Q |
204 |
ttgtttcaggtgccaccggcggactgtgatgagcatcgtctttcagttgtctgccctcttaatatatgtatctcatgattgattctgactaatatgatat |
303 |
Q |
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|||||| |||||||||||||||||| ||||||||||||||||||| |||| ||||| |||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
14321238 |
ttgtttaaggtgccaccggcggactatgatgagcatcgtctttcaattgtttgcccccttaatatatgtatctcatgatcgattttgactaatatgatat |
14321139 |
T |
|
| Q |
304 |
ctcgttgttctctatgtttggcttggattgtggagttcgaaagagctgtttagcttgctgacatttgttcccgggagttgagggtatgtggctccgcttc |
403 |
Q |
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| T |
14321138 |
ctcgtcgttctctatgtttggcttggattgtgg-gttagaaagagccgtttagcttgttgacatttgttccagggagttgatggtatgtgggtccgcttc |
14321040 |
T |
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| Q |
404 |
cgtgttgatg |
413 |
Q |
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| T |
14321039 |
cgtgttgatg |
14321030 |
T |
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Back To:
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Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 43 - 166
Target Start/End: Original strand, 41907708 - 41907831
Alignment:
| Q |
43 |
tcccaaccttcttcggttgtcctcttagatgtagtcgacttaaaggtttgtcaagggtcgtgatgcggtgttgtatctagtttatggatggttggtggca |
142 |
Q |
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||||||| |||| ||||||||||||| |||| || |||| |||||||| ||||||| ||||| ||||||||||| ||||| | |||||||| |||| |
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| T |
41907708 |
tcccaacattctccggttgtcctcttcgatgccgttgactgaaaggttttccaagggttgtgatatggtgttgtatccagtttctagatggttgctggcg |
41907807 |
T |
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| Q |
143 |
atttgttttaagatctaccgcctc |
166 |
Q |
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|| |||||| |||| ||||||||| |
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| T |
41907808 |
atctgttttcagatttaccgcctc |
41907831 |
T |
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