View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_261 (Length: 247)
Name: NF9795A_low_261
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_261 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 29668836 - 29669076
Alignment:
| Q |
1 |
gaacaacgccatttcagatcgtaaggaaaccccttctgacgacttaatgtcacgtttcatgaagaaacgagacatagacggaaagccaatcaacgccacg |
100 |
Q |
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| T |
29668836 |
gaacaacgccatttcagatcgtaaggaaaccccttctgatgacttaatgtcacgtttcatgaagaaacgagacatagacggaaagccaatcaacgccacg |
29668935 |
T |
|
| Q |
101 |
attctacaacacatcatcttaaacttcatccttgctggaagggacacgtcatcagttgctctcagctggttcttctggctggtcatgaaccatccaaaag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29668936 |
attctacaacacatcatcttaaacttcatccttgctggaagggacacgtcatcagttgctctcagctggttcttctggctggtcatgaaccatccgaaag |
29669035 |
T |
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| Q |
201 |
ttgaggagaaaataatcaaggagttaaccactgttcttgag |
241 |
Q |
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| T |
29669036 |
ttgaggagaaaataatcaaggagttaaccactgttcttgag |
29669076 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 183
Target Start/End: Original strand, 11315133 - 11315194
Alignment:
| Q |
122 |
aacttcatccttgctggaagggacacgtcatcagttgctctcagctggttcttctggctggt |
183 |
Q |
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||||||||||| |||||| | ||||||||||||||||| | ||||||||||| ||| |||| |
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| T |
11315133 |
aacttcatcctagctggacgtgacacgtcatcagttgcgttgagctggttcttttggttggt |
11315194 |
T |
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