View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9795A_low_262 (Length: 247)

Name: NF9795A_low_262
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9795A_low_262
NF9795A_low_262
[»] chr5 (3 HSPs)
chr5 (1-247)||(37704999-37705245)
chr5 (53-120)||(1629760-1629827)
chr5 (36-82)||(1629683-1629729)
[»] chr6 (5 HSPs)
chr6 (51-245)||(16419591-16419788)
chr6 (160-237)||(17411193-17411270)
chr6 (165-235)||(196111-196181)
chr6 (57-195)||(33547750-33547889)
chr6 (55-152)||(31314513-31314609)
[»] chr2 (6 HSPs)
chr2 (38-232)||(8198565-8198759)
chr2 (38-232)||(8203325-8203519)
chr2 (57-235)||(4558828-4559007)
chr2 (38-120)||(45385838-45385920)
chr2 (38-152)||(4923428-4923542)
chr2 (40-106)||(4558680-4558745)
[»] chr7 (7 HSPs)
chr7 (38-152)||(41331325-41331439)
chr7 (56-149)||(30551947-30552040)
chr7 (36-99)||(32804673-32804736)
chr7 (56-149)||(6589558-6589651)
chr7 (53-120)||(12422044-12422111)
chr7 (57-145)||(1532197-1532285)
chr7 (36-140)||(12422352-12422455)
[»] scaffold0591 (1 HSPs)
scaffold0591 (36-174)||(3866-4003)
[»] chr8 (6 HSPs)
chr8 (56-136)||(27532989-27533069)
chr8 (57-143)||(2277209-2277295)
chr8 (38-152)||(15907944-15908058)
chr8 (73-152)||(37064689-37064768)
chr8 (38-140)||(15907689-15907790)
chr8 (38-120)||(12807666-12807748)
[»] chr4 (4 HSPs)
chr4 (38-152)||(22519807-22519921)
chr4 (57-146)||(48194394-48194483)
chr4 (177-245)||(22519450-22519518)
chr4 (38-98)||(33617950-33618010)
[»] chr1 (6 HSPs)
chr1 (56-149)||(16554303-16554396)
chr1 (38-104)||(363839-363906)
chr1 (162-235)||(29954870-29954943)
chr1 (200-245)||(47726506-47726551)
chr1 (200-245)||(47747812-47747857)
chr1 (164-232)||(11016877-11016945)
[»] chr3 (4 HSPs)
chr3 (38-120)||(48200389-48200471)
chr3 (56-152)||(44291413-44291509)
chr3 (178-245)||(44291115-44291182)
chr3 (38-82)||(33291632-33291676)


Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 37705245 - 37704999
Alignment:
Q  1 aagaaacatagaaaaaacacgtacataaaataaatgttaaattacaccataagtcttttaagttatttagttgtaagaaattgatcatttaagtttttta 100  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  37705245 aagaaccatacaaaaaacacgtacataaaataaatgttaaattacaccataagtcttttaagttatttagttgtaagaaattggtcatttaagattttta 37705146  T
Q  101 cgtaccaattatgtcttttacggtacttaattataacaagttggtcctttaannnnnnncgtaccaattaggtcctctaagctatttaactgtaagaaat 200  Q
    ||||||| ||| ||| |||| | || ||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||| ||||    
T  37705145 cgtaccacttaggtcctttaagttaattaattataacaagttggtcctttaatttttttcgtaccaattaggtcctctaagctatttaactgtaacaaat 37705046  T
Q  201 tgagggatttcagatcttaaaactgcaagttattcgggacctaaagt 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  37705045 tgagggatttcagatcttaaaactgcaagttattcgggacctaaagt 37704999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 120
Target Start/End: Original strand, 1629760 - 1629827
Alignment:
Q  53 gtcttttaagttatttagttgtaagaaattgatcatttaagttttttacgtaccaattatgtctttta 120  Q
    ||||||||||||| ||| |||||| |||| |||| |||||||||||| |||| |||||| ||| ||||    
T  1629760 gtcttttaagttaattaattgtaacaaatcgatcctttaagttttttccgtagcaattaagtccttta 1629827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 82
Target Start/End: Original strand, 1629683 - 1629729
Alignment:
Q  36 gttaaattacaccataagtcttttaagttatttagttgtaagaaatt 82  Q
    |||||||||||||| ||||| ||||||||||||| |||||| |||||    
T  1629683 gttaaattacaccaaaagtcctttaagttatttaattgtaataaatt 1629729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 51 - 245
Target Start/End: Original strand, 16419591 - 16419788
Alignment:
Q  51 aagtcttttaagttatttagttgtaagaaattgatcatttaagttttttac---gtaccaattatgtcttttacggtacttaattataacaagttggtcc 147  Q
    ||||| ||||||||||||| |||||| |||||||||||| |||| ||||     ||||||||||  || |||| | || |||||| |||||||||||||     
T  16419591 aagtcctttaagttatttaattgtaacaaattgatcattgaagtattttcttttgtaccaattagatcatttaagttaattaattgtaacaagttggtca 16419690  T
Q  148 tttaannnnnnncgtaccaattaggtcctctaagctatttaactgtaagaaattgagggatttcagatcttaaaactgcaagttattcgggacctaaa 245  Q
    |||||       |||||||||| | |||| |||| |||||||| |||| || ||||||||||| |||||||| || || |||||||| ||| ||||||    
T  16419691 tttaagttttttcgtaccaatttgatcctttaagttatttaaccgtaacaatttgagggattttagatcttagaaatgtaagttatttggggcctaaa 16419788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 237
Target Start/End: Complemental strand, 17411270 - 17411193
Alignment:
Q  160 cgtaccaattaggtcctctaagctatttaactgtaagaaattgagggatttcagatcttaaaactgcaagttattcgg 237  Q
    ||||||||||| || || |||| |||||||  |||| || ||| ||||||||||||||||||| || |||||||||||    
T  17411270 cgtaccaattatgtactttaagttatttaatcgtaataatttgggggatttcagatcttaaaaatgtaagttattcgg 17411193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 235
Target Start/End: Original strand, 196111 - 196181
Alignment:
Q  165 caattaggtcctctaagctatttaactgtaagaaattgagggatttcagatcttaaaactgcaagttattc 235  Q
    |||||||||||| |||| || ||||| |||| || |||||| |||||| ||||||||| || |||||||||    
T  196111 caattaggtcctttaagttacttaaccgtaacaatttgaggtatttcatatcttaaaaatgtaagttattc 196181  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 195
Target Start/End: Original strand, 33547750 - 33547889
Alignment:
Q  57 tttaagttatttagttgtaagaaattgatcatttaagttt-tttacgtaccaattatgtcttttacggtacttaattataacaagttggtcctttaannn 155  Q
    ||||||||||||| |||||| |||||| || ||||||||| |||  || ||| ||||||| |||| | || |||||| ||||||||| ||| |||||       
T  33547750 tttaagttatttaattgtaacaaattggtcctttaagtttatttttgttccacttatgtcctttaagttaattaattgtaacaagtttgtcttttaagtt 33547849  T
Q  156 nnnncgtaccaattaggtcctctaagctatttaactgtaa 195  Q
        | ||||| ||||||||| |||| ||||||| |||||    
T  33547850 ttttcataccatttaggtcctttaagttatttaattgtaa 33547889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 152
Target Start/End: Original strand, 31314513 - 31314609
Alignment:
Q  55 cttttaagttatttagttgtaagaaattgatcatttaagttttttacgtaccaattatgtcttttacggtacttaattataacaagttggtcctttaa 152  Q
    ||||| ||||||||| || ||| || |||||||||||||||||||  ||| || |||||| ||||| | || ||||||||||||| || ||| |||||    
T  31314513 cttttgagttatttaattataacaagttgatcatttaagttttttcagtatcacttatgt-ttttaagttatttaattataacaaattagtcatttaa 31314609  T

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Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 38 - 232
Target Start/End: Complemental strand, 8198759 - 8198565
Alignment:
Q  38 taaattacaccataagtcttttaagttatttagttgtaagaaattgatcatttaagttttttacgtaccaattatgtcttttacggtacttaattataac 137  Q
    ||||||| |||| || || ||||||||| ||| |||||| |||||| || |||||||||||| ||||||| ||| ||| |||| | || |||||| |||     
T  8198759 taaattataccagaaatcctttaagttagttaattgtaacaaattggtc-tttaagttttttccgtaccacttaggtcctttaagataattaattgtaat 8198661  T
Q  138 aagttggtcctttaannnnnnnc-gtaccaattaggtcctctaagctatttaactgtaagaaattgagggatttcagatcttaaaactgcaagtta 232  Q
    ||||||| |||||||       | |||||||||||||||| |||| |||||||| |||| || ||  ||||||||||||||||||| || ||||||    
T  8198660 aagttggccctttaagttttttccgtaccaattaggtcctttaagttatttaaccgtaacaatttaggggatttcagatcttaaaaatgtaagtta 8198565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 38 - 232
Target Start/End: Complemental strand, 8203519 - 8203325
Alignment:
Q  38 taaattacaccataagtcttttaagttatttagttgtaagaaattgatcatttaagttttttacgtaccaattatgtcttttacggtacttaattataac 137  Q
    ||||||| |||| || || ||||||||| ||| |||||| |||||| || |||||||||||| ||||||| ||| ||| |||| | || |||||| |||     
T  8203519 taaattataccagaaatcctttaagttagttaattgtaacaaattggtc-tttaagttttttccgtaccacttaggtcctttaagataattaattgtaat 8203421  T
Q  138 aagttggtcctttaannnnnnnc-gtaccaattaggtcctctaagctatttaactgtaagaaattgagggatttcagatcttaaaactgcaagtta 232  Q
    ||||||| |||||||       | |||||||||||||||| |||| |||||||| |||| || ||  ||||||||||||||||||| || ||||||    
T  8203420 aagttggccctttaagttttttccgtaccaattaggtcctttaagttatttaaccgtaacaatttaggggatttcagatcttaaaaatgtaagtta 8203325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 235
Target Start/End: Complemental strand, 4559007 - 4558828
Alignment:
Q  57 tttaagttatttagttgtaagaaattgatcatttaagttttttacg-taccaattatgtcttttacggtacttaattataacaagttggtcctttaannn 155  Q
    ||||||||||||| |||||| ||||||||| ||||||||||||  | ||| | ||| ||  |||| | || |||||| |||||||||| ||||||||       
T  4559007 tttaagttatttaattgtaataaattgatc-tttaagttttttttggtacaacttaggtactttatgttaattaattgtaacaagttgttcctttaagtt 4558909  T
Q  156 nnnnc-gtaccaattaggtcctctaagctatttaactgtaagaaattgagggatttcagatcttaaaactgcaagttattc 235  Q
        | |||||||||||||||| ||||||||||||| ||||  | |||||| |||| ||||||||||| ||||||||||||    
T  4558908 ttgtctgtaccaattaggtcctttaagctatttaaccgtaactatttgaggtattttagatcttaaaaatgcaagttattc 4558828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 120
Target Start/End: Original strand, 45385838 - 45385920
Alignment:
Q  38 taaattacaccataagtcttttaagttatttagttgtaagaaattgatcatttaagttttttacgtaccaattatgtctttta 120  Q
    |||||||||||||| ||| ||||||||||||| |||||| ||||||  | |||||||||||| ||||||| ||| ||| ||||    
T  45385838 taaattacaccataggtcctttaagttatttaattgtaacaaattggccctttaagtttttttcgtaccacttacgtccttta 45385920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 152
Target Start/End: Original strand, 4923428 - 4923542
Alignment:
Q  38 taaattacaccataagtcttttaagttatttagttgtaagaaattgatcatttaagttttttacgtaccaattatgtcttttacggtacttaattataac 137  Q
    |||||||||||  | |||| ||||||| |||| || ||| |||||||||||||| ||||||| ||||||| ||| || ||||||| || | |||| |||     
T  4923428 taaattacaccggatgtctcttaagttttttaattataataaattgatcatttatgttttttccgtaccatttaggttttttacgttaataaattgtaat 4923527  T
Q  138 aagttggtcctttaa 152  Q
    |||||  ||||||||    
T  4923528 aagttaatcctttaa 4923542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 4558680 - 4558745
Alignment:
Q  40 aattacaccataagtcttttaagttatttagttgtaagaaattgatcatttaagttttttacgtacc 106  Q
    |||||||| |||| ||| |||||||||||| |||||| |||||| || |||||||||||| ||||||    
T  4558680 aattacacgataattctcttaagttatttaattgtaataaattggtc-tttaagtttttttcgtacc 4558745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 38 - 152
Target Start/End: Complemental strand, 41331439 - 41331325
Alignment:
Q  38 taaattacaccataagtcttttaagttatttagttgtaagaaattgatcatttaagttttttacgtaccaattatgtcttttacggtacttaattataac 137  Q
    ||||||| | |||||||| ||||||||||||| |||||| |||||||||||||||||||||  |||||||  ||  || |||| | || | |||||||||    
T  41331439 taaattatatcataagtcatttaagttatttaattgtaataaattgatcatttaagtttttctcgtaccacctagctcatttaagttaataaattataac 41331340  T
Q  138 aagttggtcctttaa 152  Q
    |||||||| ||||||    
T  41331339 aagttggttctttaa 41331325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 149
Target Start/End: Complemental strand, 30552040 - 30551947
Alignment:
Q  56 ttttaagttatttagttgtaagaaattgatcatttaagttttttacgtaccaattatgtcttttacggtacttaattataacaagttggtcctt 149  Q
    |||||||||||||| |||||| |||||| || ||||||||||||  |||||| ||| ||| |||| | || | |||| ||||||||||||||||    
T  30552040 ttttaagttatttaattgtaataaattggtcctttaagtttttttggtaccacttaggtcatttaagttaatcaattgtaacaagttggtcctt 30551947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 99
Target Start/End: Complemental strand, 32804736 - 32804673
Alignment:
Q  36 gttaaattacaccataagtcttttaagttatttagttgtaagaaattgatcatttaagtttttt 99  Q
    |||||||||||||| |||||||||| | |||||| |||||| ||||||||| |||| |||||||    
T  32804736 gttaaattacaccacaagtcttttaggatatttaattgtaataaattgatcttttaggtttttt 32804673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 149
Target Start/End: Complemental strand, 6589651 - 6589558
Alignment:
Q  56 ttttaagttatttagttgtaagaaattgatcatttaagttttttacgtaccaattatgtcttttacggtacttaattataacaagttggtcctt 149  Q
    |||||||| ||||| |||||| ||||||||| ||||||||||||  |||||| ||| ||| |||| | || | |||| ||| ||||||||||||    
T  6589651 ttttaagtaatttaattgtaataaattgatcctttaagtttttttggtaccacttaggtcatttaagttaatcaattgtaataagttggtcctt 6589558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 120
Target Start/End: Original strand, 12422044 - 12422111
Alignment:
Q  53 gtcttttaagttatttagttgtaagaaattgatcatttaagttttttacgtaccaattatgtctttta 120  Q
    ||||||||||||||| | |||||| |||||| ||||||||||||||| | ||||| ||| ||| ||||    
T  12422044 gtcttttaagttattaaattgtaataaattggtcatttaagtttttttcataccacttaggtccttta 12422111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 145
Target Start/End: Original strand, 1532197 - 1532285
Alignment:
Q  57 tttaagttatttagttgtaagaaattgatcatttaagttttttacgtaccaattatgtcttttacggtacttaattataacaagttggt 145  Q
    ||||||||||||| |||||| || |||||||||||  ||||||  |||||  ||| ||| |||| | || |||| ||||||||||||||    
T  1532197 tttaagttatttaattgtaataagttgatcatttacattttttttgtacctcttaggtcctttaagttatttaactataacaagttggt 1532285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 140
Target Start/End: Complemental strand, 12422455 - 12422352
Alignment:
Q  36 gttaaattacaccataagtcttttaagttatttagttgtaagaaattgatcatttaagttttttacgtaccaattatgtcttttacggtacttaattata 135  Q
    |||||||||||||  || |  ||||||||||||| |||||| ||||| ||| ||||||||||||  ||| || ||| |||||||| | || |||||| ||    
T  12422455 gttaaattacaccggaatttctttaagttatttaattgtaacaaattcatcctttaagtttttt-tgtatcacttacgtcttttaagttatttaatttta 12422357  T
Q  136 acaag 140  Q
    |||||    
T  12422356 acaag 12422352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0591 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 174
Target Start/End: Complemental strand, 4003 - 3866
Alignment:
Q  36 gttaaattacaccataagtcttttaagttatttagttgtaagaaattgatcatttaagttttttacgtaccaattatgtcttttacggtacttaattata 135  Q
    |||||||||||||| ||||| |||| |||||||| |||||| |||||||||||||||||| ||| | ||||| | | ||| |||| | || || ||| ||    
T  4003 gttaaattacaccagaagtcatttatgttatttaattgtaataaattgatcatttaagttattttcctaccactgaggtc-tttaagttaattgattgta 3905  T
Q  136 acaagttggtcctttaannnnnnncgtaccaattaggtc 174  Q
    |||||||||||||||||       |||||||||||||||    
T  3904 acaagttggtcctttaagttttttcgtaccaattaggtc 3866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 136
Target Start/End: Original strand, 27532989 - 27533069
Alignment:
Q  56 ttttaagttatttagttgtaagaaattgatcatttaagttttttacgtaccaattatgtcttttacggtacttaattataa 136  Q
    |||||||||||||| |||||| ||||||||| ||||||||||||| |||||| ||| ||| |||| | || ||||||||||    
T  27532989 ttttaagttatttaattgtaataaattgatcttttaagttttttatgtaccacttacgtcctttaagttatttaattataa 27533069  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 143
Target Start/End: Complemental strand, 2277295 - 2277209
Alignment:
Q  57 tttaagttatttagttgtaagaaattgatcatttaagttttttacgtaccaattatgtcttttacggtacttaattataacaagttg 143  Q
    ||||||||||||| |||||| ||||||||| ||||||||||||  |||||| ||| ||| |||| | || |||||| ||||||||||    
T  2277295 tttaagttatttaattgtaacaaattgatcctttaagttttttttgtaccacttaggtcctttaagttaattaattgtaacaagttg 2277209  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 152
Target Start/End: Complemental strand, 15908058 - 15907944
Alignment:
Q  38 taaattacaccataagtcttttaagttatttagttgtaagaaattgatcatttaagttttttacgtaccaattatgtcttttacggtacttaattataac 137  Q
    |||||||||||| || || |||||| ||||||  ||||| |||||  | ||||||||||||| | ||||| ||| || ||||| | || |||||||||||    
T  15908058 taaattacaccaaaaatcctttaagatatttaactgtaataaattagttatttaagtttttttcataccacttaggttttttaggttaattaattataac 15907959  T
Q  138 aagttggtcctttaa 152  Q
    |||||| ||||||||    
T  15907958 aagttgatcctttaa 15907944  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 152
Target Start/End: Complemental strand, 37064768 - 37064689
Alignment:
Q  73 gtaagaaattgatcatttaagttttttacgtaccaattatgtcttttacggtacttaattataacaagttggtcctttaa 152  Q
    |||| ||||| |||| ||||||||||| || |||| ||| ||| |||| | || ||||||||||||||||||||||||||    
T  37064768 gtaataaattaatcaattaagtttttttcgcaccacttaagtcctttaagttaattaattataacaagttggtcctttaa 37064689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 140
Target Start/End: Original strand, 15907689 - 15907790
Alignment:
Q  38 taaattacaccataagtcttttaagttatttagttgtaagaaattgatcatttaagttttttacgtaccaattatgtcttttacggtacttaattataac 137  Q
    |||||||||||| || || ||||||||||||| |||| | |||||| || |||||||||||| ||||||| |||| |  |||| | || |||||||||||    
T  15907689 taaattacaccagaaatcctttaagttatttacttgtgataaattggtc-tttaagtttttttcgtaccacttatattctttaagttaattaattataac 15907787  T
Q  138 aag 140  Q
    |||    
T  15907788 aag 15907790  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 120
Target Start/End: Complemental strand, 12807748 - 12807666
Alignment:
Q  38 taaattacaccataagtcttttaagttatttagttgtaagaaattgatcatttaagttttttacgtaccaattatgtctttta 120  Q
    |||||||||||| |  |||||||||||||||| |||| | ||||||||  ||||| |||||||| ||||| ||| ||| ||||    
T  12807748 taaattacaccagagatcttttaagttatttaattgttataaattgattttttaaattttttacataccacttaggtccttta 12807666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 38 - 152
Target Start/End: Complemental strand, 22519921 - 22519807
Alignment:
Q  38 taaattacaccataagtcttttaagttatttagttgtaagaaattgatcatttaagttttttac-gtaccaattatgtcttttacggtacttaattataa 136  Q
    |||||||||||| | |||||| || ||||||| |||||| |||||| || || ||||||||| | |||||| ||| |||||||| | || ||||||||||    
T  22519921 taaattacaccagaggtctttaaa-ttatttaattgtaacaaattggtccttaaagtttttttccgtaccacttaggtcttttaagttaattaattataa 22519823  T
Q  137 caagttggtcctttaa 152  Q
    ||||||| ||||||||    
T  22519822 caagttgatcctttaa 22519807  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 146
Target Start/End: Complemental strand, 48194483 - 48194394
Alignment:
Q  57 tttaagttatttagttgtaagaaattgatcatttaagttttttacgtaccaattatgtcttttacggtacttaattataacaagttggtc 146  Q
    ||||||||||||| |||||| || ||||||||||| ||||||| ||||||  ||| ||| |||| | || |||| | |||||||||||||    
T  48194483 tttaagttatttaattgtaataagttgatcatttacgtttttttcgtacctcttaggtcctttaagttatttaactgtaacaagttggtc 48194394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 245
Target Start/End: Complemental strand, 22519518 - 22519450
Alignment:
Q  177 ctaagctatttaactgtaagaaattgagggatttcagatcttaaaactgcaagttattcgggacctaaa 245  Q
    ||||| |||||||| |||  || ||| ||||||||||||||||||| || |||||||| ||||||||||    
T  22519518 ctaagttatttaaccgtagcaatttgggggatttcagatcttaaaaatgtaagttatttgggacctaaa 22519450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 33618010 - 33617950
Alignment:
Q  38 taaattacaccataagtcttttaagttatttagttgtaagaaattgatcatttaagttttt 98  Q
    |||||||||| | | ||| ||||||||||||| |||||| |||||| || |||||||||||    
T  33618010 taaattacacaagaggtcatttaagttatttaattgtaataaattggtcctttaagttttt 33617950  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 149
Target Start/End: Original strand, 16554303 - 16554396
Alignment:
Q  56 ttttaagttatttagttgtaagaaattgatcatttaagttttttacgtaccaattatgtcttttacggtacttaattataacaagttggtcctt 149  Q
    |||||||||||||| |||||| |||||| || ||||||||||||  |||||| ||| ||| |||| | || | |||| ||||||||||||||||    
T  16554303 ttttaagttatttaattgtaataaattggtcctttaagtttttttggtaccacttaagtcatttaagttaatcaattgtaacaagttggtcctt 16554396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 363906 - 363839
Alignment:
Q  38 taaattacaccataagt-cttttaagttatttagttgtaagaaattgatcatttaagttttttacgta 104  Q
    |||||||||||| | || ||||||||||||||| ||||||||||||  |||||||||| |||| ||||    
T  363906 taaattacaccagatgttcttttaagttatttaattgtaagaaatttgtcatttaagtatttttcgta 363839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 235
Target Start/End: Original strand, 29954870 - 29954943
Alignment:
Q  162 taccaattaggtcctctaagctatttaactgtaagaaattgagggatttcagatcttaaaactgcaagttattc 235  Q
    ||||||||||||||| |||| |||||||| |||| || |||  | |||||| ||||||||| || |||||||||    
T  29954870 taccaattaggtcctttaagttatttaaccgtaataatttggagaatttcatatcttaaaaatgtaagttattc 29954943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 245
Target Start/End: Complemental strand, 47726551 - 47726506
Alignment:
Q  200 ttgagggatttcagatcttaaaactgcaagttattcgggacctaaa 245  Q
    |||||| |||||| ||||||||| |||||||||||||||| |||||    
T  47726551 ttgaggaatttcatatcttaaaaatgcaagttattcgggatctaaa 47726506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 245
Target Start/End: Complemental strand, 47747857 - 47747812
Alignment:
Q  200 ttgagggatttcagatcttaaaactgcaagttattcgggacctaaa 245  Q
    |||||| |||||| ||||||||| |||||||||||||||| |||||    
T  47747857 ttgaggaatttcatatcttaaaaatgcaagttattcgggatctaaa 47747812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 11016945 - 11016877
Alignment:
Q  164 ccaattaggtcctctaagctatttaactgtaagaaattgagggatttcagatcttaaaactgcaagtta 232  Q
    ||||||||||||| ||| ||||||||| |||| || ||||| ||||| | ||||||||| || ||||||    
T  11016945 ccaattaggtcctttaaactatttaaccgtaacaatttgagagatttaaaatcttaaaaatgtaagtta 11016877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 120
Target Start/End: Complemental strand, 48200471 - 48200389
Alignment:
Q  38 taaattacaccataagtcttttaagttatttagttgtaagaaattgatcatttaagttttttacgtaccaattatgtctttta 120  Q
    |||||||||| | || |||||||| ||||||| ||||||  |||||||||||||| |||||| ||||||  ||| ||||||||    
T  48200471 taaattacactagaaatcttttaacttatttaattgtaaagaattgatcatttaattttttttcgtaccgcttaagtctttta 48200389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 152
Target Start/End: Complemental strand, 44291509 - 44291413
Alignment:
Q  56 ttttaagttatttagttgtaagaaattgatcatttaagttttttacgtaccaattatgtcttttacggtacttaattataacaagttggtcctttaa 152  Q
    |||||||||||||| |||||| |||||| || | ||| ||||||  ||| || ||||||| |||| | || |||||| ||||||||| |||||||||    
T  44291509 ttttaagttatttaattgtaacaaattggtcctctaaatttttttagtatcacttatgtcctttaagttatttaattgtaacaagttagtcctttaa 44291413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 245
Target Start/End: Original strand, 44291115 - 44291182
Alignment:
Q  178 taagctatttaactgtaagaaattgagggatttcagatcttaaaactgcaagttattcgggacctaaa 245  Q
    |||| |||||||| |||| || ||  ||||||| ||||||||||| || |||||||||||||||||||    
T  44291115 taagttatttaaccgtaacaattttggggattttagatcttaaaaatgtaagttattcgggacctaaa 44291182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 33291676 - 33291632
Alignment:
Q  38 taaattacaccataagtcttttaagttatttagttgtaagaaatt 82  Q
    ||||||||| |||||||| ||||||||||||| |||||| |||||    
T  33291676 taaattacaacataagtcctttaagttatttaattgtaacaaatt 33291632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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