View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9795A_low_264 (Length: 247)

Name: NF9795A_low_264
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9795A_low_264
NF9795A_low_264
[»] chr4 (9 HSPs)
chr4 (1-238)||(35241094-35241331)
chr4 (1-217)||(35283392-35283608)
chr4 (15-217)||(35277895-35278097)
chr4 (15-214)||(35271216-35271412)
chr4 (140-217)||(35253476-35253553)
chr4 (15-158)||(35275244-35275384)
chr4 (11-158)||(35286935-35287079)
chr4 (1-42)||(35253331-35253372)
chr4 (11-99)||(35246737-35246832)


Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 35241094 - 35241331
Alignment:
Q  1 cactaggcttcctgcctgaaattcatttttatacaagtcattgtattcatgtgatctatgagtagttgttattcagttttgaatactaaaagatgagtgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  35241094 cactaggcttcctgcctgaaattcatttttatacaagtcattgtattcatgtgatctatgagtagttgtcattcagttttgaatactaaaagatgagtgt 35241193  T
Q  101 aagactcacaatacagtggttaatcctgacacgctgattgagatcccatactttaattacattactggtatcggacgagcaaagagttcctcctaatggg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35241194 aagactcacaatacagtggttaatcctgacacgctgattgagatcccatactttaattacattactggtatcggacgagcaaagagttcctcctaatggg 35241293  T
Q  201 tggaagtccaatgatctaacgtgcgcctgatgtccatc 238  Q
    |||||||||||||||||||| ||||||| |||| ||||    
T  35241294 tggaagtccaatgatctaacttgcgcctcatgttcatc 35241331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 35283392 - 35283608
Alignment:
Q  1 cactaggcttcctgcctgaaattcatttttatacaagtcattgtattcatgtgatctatgagtagttgttattcagttttgaatactaaaagatgagtgt 100  Q
    ||||||||||||||||||||||||||||||| | ||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||| ||||||    
T  35283392 cactaggcttcctgcctgaaattcatttttacataagtcattgtactcatgtgacctgtgagtagttgttattcagttttgaatactaaaagacgagtgt 35283491  T
Q  101 aagactcacaatacagtggttaatcctgacacgctgattgagatcccatactttaattacattactggtatcggacgagcaaagagttcctcctaatggg 200  Q
    || |||||| ||| |||  || ||| |||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||    
T  35283492 aaaactcaccataaagttcttcatcatgacacgctgattgaggtcccatactttaattacatcacaggtatcggacgagcaaagaattcctcctaatggg 35283591  T
Q  201 tggaagtccaatgatct 217  Q
     ||||||||||||||||    
T  35283592 aggaagtccaatgatct 35283608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 15 - 217
Target Start/End: Original strand, 35277895 - 35278097
Alignment:
Q  15 cctgaaattcatttttatacaagtcattgtattcatgtgatctatgagtagttgttattcagttttgaatactaaaagatgagtgtaagactcacaatac 114  Q
    ||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||     
T  35277895 cctgaaattcatttttatacaagtcattgtactcatgtgacctgtgagtagttgttattcagttttgaatactaaaagacgagtgtaggactcaccataa 35277994  T
Q  115 agtggttaatcctgacacgctgattgagatcccatactttaattacattactggtatcggacgagcaaagagttcctcctaatgggtggaagtccaatga 214  Q
    ||   || ||  ||||||||||||||||||||||||||||||||| || || |||||| |||||||||||| ||| | ||  ||||||||||||||||||    
T  35277995 aggtcttcattatgacacgctgattgagatcccatactttaattaaatcacaggtatcagacgagcaaagaattctttctgttgggtggaagtccaatga 35278094  T
Q  215 tct 217  Q
    |||    
T  35278095 tct 35278097  T

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Target: chr4; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 15 - 214
Target Start/End: Original strand, 35271216 - 35271412
Alignment:
Q  15 cctgaaattcatttttatacaagtcattgtattcatgtgatctatgagtagttgttattcagttttgaatactaaaagatgagtgtaagactcacaatac 114  Q
    |||||||||||| |||||||||||||| ||| |||||||| || ||||| |||   ||||||||||||||||||||| |||||||| ||||||||  ||     
T  35271216 cctgaaattcatgtttatacaagtcatagtactcatgtgacctgtgagtggtt---attcagttttgaatactaaaatatgagtgttagactcactgtaa 35271312  T
Q  115 agtggttaatcctgacacgctgattgagatcccatactttaattacattactggtatcggacgagcaaagagttcctcctaatgggtggaagtccaatga 214  Q
    ||| ||||||| |||||| ||| | ||||||||||||||||||| ||| ||  ||||| |||||||||||| || ||| |||||||||||||||||||||    
T  35271313 agttgttaatcgtgacacactgttcgagatcccatactttaattgcatcacatgtatcagacgagcaaagaatttctcgtaatgggtggaagtccaatga 35271412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 140 - 217
Target Start/End: Original strand, 35253476 - 35253553
Alignment:
Q  140 gagatcccatactttaattacattactggtatcggacgagcaaagagttcctcctaatgggtggaagtccaatgatct 217  Q
    ||||||||||||||||||||||| || ||||||||||| |||||||  ||||||||||||||| ||||||||||||||    
T  35253476 gagatcccatactttaattacatcacaggtatcggacgtgcaaagaactcctcctaatgggtgaaagtccaatgatct 35253553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 158
Target Start/End: Original strand, 35275244 - 35275384
Alignment:
Q  15 cctgaaattcatttttatacaagtcattgtattcatgtgatctatgagtagttgttattcagttttgaatactaaaagatgagtgtaagactcacaatac 114  Q
    |||||||||||| ||||| ||||||||| ||||||| |||  | ||||||    ||||||||||||||||||||||| || ||||| ||||||||  ||     
T  35275244 cctgaaattcatgtttatgcaagtcattttattcatatgacttgtgagta---tttattcagttttgaatactaaaatataagtgtcagactcaccttaa 35275340  T
Q  115 agtggttaatcctgacacgctgattgagatcccatactttaatt 158  Q
     || | ||||| |||||||||||||||||||||||| |||||||    
T  35275341 tgttgctaatcatgacacgctgattgagatcccataatttaatt 35275384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 158
Target Start/End: Original strand, 35286935 - 35287079
Alignment:
Q  11 cctgcctgaaattcatttttatacaagtcattgtattcatgtgatctatgagtagttgttattcagttttgaatactaaaagatgagtgtaagactcaca 110  Q
    ||||||||||||||||||||||| ||||| |||||||||||||| |    ||||  |   |||| ||||||||||| |||||| |||||||||||||||     
T  35286935 cctgcctgaaattcatttttatataagtctttgtattcatgtgaccggcaagtaact---attctgttttgaatacaaaaagaggagtgtaagactcacc 35287031  T
Q  111 atacagtggttaatcctgacacgctgattgagatcccatactttaatt 158  Q
     ||||||  |||||| | | || | |||||||||||||||||| ||||    
T  35287032 ttacagtttttaatcttaatacaccgattgagatcccatacttgaatt 35287079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 35253331 - 35253372
Alignment:
Q  1 cactaggcttcctgcctgaaattcatttttatacaagtcatt 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  35253331 cactaggcttcctgcctgaaattcatttttatacaagtcatt 35253372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 35246737 - 35246832
Alignment:
Q  11 cctgcctgaaattcatttttatacaagtcattgtattcatgtgatct---atgagta----gttgttattcagttttgaatactaaaagatgagtg 99  Q
    |||||||| |||||||||||||||||||||||||| | | |||| ||    ||||||     |||||||||||||||||||| |||||||||||||    
T  35246737 cctgcctgcaattcatttttatacaagtcattgtacttaagtgacctgtggtgagtacttgtttgttattcagttttgaatagtaaaagatgagtg 35246832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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