View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9795A_low_265 (Length: 246)

Name: NF9795A_low_265
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9795A_low_265
NF9795A_low_265
[»] chr8 (2 HSPs)
chr8 (68-160)||(34824219-34824311)
chr8 (18-68)||(34824144-34824194)
[»] chr7 (1 HSPs)
chr7 (76-196)||(44147806-44147926)
[»] chr2 (1 HSPs)
chr2 (74-196)||(5751738-5751860)
[»] chr1 (1 HSPs)
chr1 (100-167)||(32652561-32652628)
[»] chr4 (1 HSPs)
chr4 (113-160)||(23239399-23239446)


Alignment Details
Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 68 - 160
Target Start/End: Original strand, 34824219 - 34824311
Alignment:
Q  68 tgcatcgtgtatactgcagaattagccggagaaccagataatggttgaacatttacaccccacttgttactatctagatggactgcggcaagt 160  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34824219 tgcatcgtgtatactgcagaattagccggagaaccagataatggttgaacatttacaccccacttgttactatctagatggactgcggcaagt 34824311  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 34824144 - 34824194
Alignment:
Q  18 acatcaataacagttgaatcaaacttcagttagagaaagacagtttaccat 68  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34824144 acatcaataacagttaaatcaaacttcagttagagaaagacagtttaccat 34824194  T

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Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 76 - 196
Target Start/End: Original strand, 44147806 - 44147926
Alignment:
Q  76 gtatactgcagaattagccggagaaccagataatggttgaacatttacaccccacttgttactatctagatggactgcggcaagtacccttttttgacat 175  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||| |||||| |||| |  ||||||    
T  44147806 gtatactgcagaattcgccggggaaccagataacggttgaacatttacaccccacttgttactatccagatggattgcagcaagtgccctctcctgacat 44147905  T
Q  176 agtttttcaagctcatcaatg 196  Q
    ||| |||||| ||||||||||    
T  44147906 agtatttcaatctcatcaatg 44147926  T

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Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 74 - 196
Target Start/End: Original strand, 5751738 - 5751860
Alignment:
Q  74 gtgtatactgcagaattagccggagaaccagataatggttgaacatttacaccccacttgttactatctagatggactgcggcaagtacccttttttgac 173  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||| | ||| || | | |||||| ||| |    
T  5751738 gtgtatactgcaaaattagccggggaaccagataatggttgaacatttacaccccacttgtcaccatctagatgaaatgcagccaatgccctttgttggc 5751837  T
Q  174 atagtttttcaagctcatcaatg 196  Q
    ||||  |||| ||||||||||||    
T  5751838 ataggatttcgagctcatcaatg 5751860  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 100 - 167
Target Start/End: Complemental strand, 32652628 - 32652561
Alignment:
Q  100 accagataatggttgaacatttacaccccacttgttactatctagatggactgcggcaagtacccttt 167  Q
    ||||| |||||||| |||| ||||||||||||| |||| ||||||||||| |||||||||||||||||    
T  32652628 accagctaatggtttaacacttacaccccacttattacaatctagatggaatgcggcaagtacccttt 32652561  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 113 - 160
Target Start/End: Complemental strand, 23239446 - 23239399
Alignment:
Q  113 tgaacatttacaccccacttgttactatctagatggactgcggcaagt 160  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  23239446 tgaacatttacaccccacttgttacaatctagatggaatgcggcaagt 23239399  T

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