View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9795A_low_269 (Length: 246)
Name: NF9795A_low_269
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_269 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 21 - 200
Target Start/End: Complemental strand, 43098995 - 43098816
Alignment:
| Q |
21 |
tatactaatgtaagtgtcatcaaatggtgagctagacctgacatacaagttttagacagtagtactatatgattttgcattttgcaagctgctgttagtc |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
43098995 |
tatactaatgtaagtgtcatcaaatggtgagctagacctgacatacaagttttagacggtagtactatatgattttgcattttgcaagcagctgttagtc |
43098896 |
T |
|
| Q |
121 |
tgttacatgttctagttttcgaactttattaaatgctgaccaaacttgtctcttttgcctgacattgttacagctagttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43098895 |
tgttacatgttctagttttcgaactttattaaatgctgaccaaacttgtctcttttgcctgacattgttacagctagttt |
43098816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University