View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9795A_low_272 (Length: 246)

Name: NF9795A_low_272
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9795A_low_272
NF9795A_low_272
[»] scaffold0129 (1 HSPs)
scaffold0129 (110-234)||(38169-38293)
[»] chr8 (8 HSPs)
chr8 (110-234)||(32741318-32741442)
chr8 (110-234)||(35217408-35217532)
chr8 (110-234)||(42989944-42990068)
chr8 (110-234)||(9312661-9312785)
chr8 (110-234)||(38224164-38224288)
chr8 (110-234)||(16727291-16727415)
chr8 (110-234)||(23716339-23716463)
chr8 (110-234)||(44501595-44501719)
[»] chr7 (6 HSPs)
chr7 (110-234)||(336520-336644)
chr7 (110-234)||(3523664-3523788)
chr7 (110-234)||(10268307-10268431)
chr7 (110-234)||(32592086-32592210)
chr7 (110-234)||(25519451-25519575)
chr7 (110-174)||(11806013-11806077)
[»] chr5 (7 HSPs)
chr5 (110-234)||(3616281-3616405)
chr5 (110-234)||(43489065-43489189)
chr5 (110-234)||(2027441-2027565)
chr5 (110-234)||(37037875-37037999)
chr5 (110-234)||(23416658-23416782)
chr5 (110-234)||(37827674-37827798)
chr5 (16-106)||(38954600-38954690)
[»] chr4 (12 HSPs)
chr4 (110-234)||(1084692-1084816)
chr4 (110-234)||(14678072-14678196)
chr4 (110-234)||(17195032-17195156)
chr4 (110-234)||(45107891-45108015)
chr4 (110-234)||(21398231-21398355)
chr4 (110-226)||(5926849-5926965)
chr4 (110-234)||(27182156-27182281)
chr4 (110-234)||(49545771-49545895)
chr4 (149-234)||(10486446-10486531)
chr4 (110-204)||(54072263-54072357)
chr4 (110-174)||(15056005-15056069)
chr4 (110-154)||(10489439-10489483)
[»] chr3 (3 HSPs)
chr3 (110-234)||(44552400-44552524)
chr3 (110-234)||(34946520-34946644)
chr3 (110-234)||(38517262-38517386)
[»] chr2 (5 HSPs)
chr2 (110-234)||(3535891-3536015)
chr2 (110-234)||(12533953-12534077)
chr2 (110-234)||(7355616-7355740)
chr2 (110-234)||(2273577-2273701)
chr2 (110-174)||(43380264-43380328)
[»] chr1 (5 HSPs)
chr1 (110-234)||(16640924-16641048)
chr1 (110-234)||(22146814-22146938)
chr1 (110-234)||(41774905-41775029)
chr1 (110-234)||(8363404-8363529)
chr1 (110-174)||(29650608-29650672)
[»] chr6 (3 HSPs)
chr6 (110-234)||(30703205-30703329)
chr6 (110-234)||(14219965-14220089)
chr6 (110-174)||(5309439-5309503)


Alignment Details
Target: scaffold0129 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 110 - 234
Target Start/End: Original strand, 38169 - 38293
Alignment:
Q  110 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38169 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 38268  T
Q  210 ttcattagattgtcgatgtccatct 234  Q
    ||||||||||||||||| |||||||    
T  38269 ttcattagattgtcgatatccatct 38293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 110 - 234
Target Start/End: Original strand, 32741318 - 32741442
Alignment:
Q  110 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32741318 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 32741417  T
Q  210 ttcattagattgtcgatgtccatct 234  Q
    ||||||||||||||||| |||||||    
T  32741418 ttcattagattgtcgatatccatct 32741442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 35217532 - 35217408
Alignment:
Q  110 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35217532 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 35217433  T
Q  210 ttcattagattgtcgatgtccatct 234  Q
    ||||||||||||||||| |||||||    
T  35217432 ttcattagattgtcgatatccatct 35217408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 42990068 - 42989944
Alignment:
Q  110 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42990068 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 42989969  T
Q  210 ttcattagattgtcgatgtccatct 234  Q
    ||||||||||||||||| |||||||    
T  42989968 ttcattagattgtcgatatccatct 42989944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 110 - 234
Target Start/End: Original strand, 9312661 - 9312785
Alignment:
Q  110 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9312661 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtatgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 9312760  T
Q  210 ttcattagattgtcgatgtccatct 234  Q
    ||||||||||||||||| |||||||    
T  9312761 ttcattagattgtcgatatccatct 9312785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 38224288 - 38224164
Alignment:
Q  110 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 209  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38224288 atcatctttgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 38224189  T
Q  210 ttcattagattgtcgatgtccatct 234  Q
    ||||||||||||||||| |||||||    
T  38224188 ttcattagattgtcgatatccatct 38224164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 110 - 234
Target Start/End: Original strand, 16727291 - 16727415
Alignment:
Q  110 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  16727291 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtatgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacatgggtag 16727390  T
Q  210 ttcattagattgtcgatgtccatct 234  Q
    ||||||||||||||||| |||||||    
T  16727391 ttcattagattgtcgatatccatct 16727415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 110 - 234
Target Start/End: Original strand, 23716339 - 23716463
Alignment:
Q  110 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  23716339 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctaggtag 23716438  T
Q  210 ttcattagattgtcgatgtccatct 234  Q
    ||||||||||| ||||| |||||||    
T  23716439 ttcattagattttcgatatccatct 23716463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 110 - 234
Target Start/End: Original strand, 44501595 - 44501719
Alignment:
Q  110 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 209  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  44501595 atcatcttcgtcgtcatcctttgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctaggtag 44501694  T
Q  210 ttcattagattgtcgatgtccatct 234  Q
    ||||||||||||||||| |||||||    
T  44501695 ttcattagattgtcgatatccatct 44501719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 121; Significance: 4e-62; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 336644 - 336520
Alignment:
Q  110 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  336644 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 336545  T
Q  210 ttcattagattgtcgatgtccatct 234  Q
    ||||||||||||||||| |||||||    
T  336544 ttcattagattgtcgatatccatct 336520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 3523788 - 3523664
Alignment:
Q  110 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3523788 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 3523689  T
Q  210 ttcattagattgtcgatgtccatct 234  Q
    ||||||||||||||||| |||||||    
T  3523688 ttcattagattgtcgatatccatct 3523664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 110 - 234
Target Start/End: Original strand, 10268307 - 10268431
Alignment:
Q  110 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10268307 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 10268406  T
Q  210 ttcattagattgtcgatgtccatct 234  Q
    ||||||||||||||||| |||||||    
T  10268407 ttcattagattgtcgatatccatct 10268431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 32592210 - 32592086
Alignment:
Q  110 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32592210 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 32592111  T
Q  210 ttcattagattgtcgatgtccatct 234  Q
    ||||||||||||||||| |||||||    
T  32592110 ttcattagattgtcgatatccatct 32592086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 25519575 - 25519451
Alignment:
Q  110 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 209  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25519575 atcatctttgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 25519476  T
Q  210 ttcattagattgtcgatgtccatct 234  Q
    ||||||||||||||||| |||||||    
T  25519475 ttcattagattgtcgatatccatct 25519451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 11806077 - 11806013
Alignment:
Q  110 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactct 174  Q
    |||||||||| ||| ||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  11806077 atcatcttcgccgtaatcctctgcattgttctcaatgatagtattcacaatatcttctaaactct 11806013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 3616405 - 3616281
Alignment:
Q  110 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3616405 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 3616306  T
Q  210 ttcattagattgtcgatgtccatct 234  Q
    ||||||||||||||||| |||||||    
T  3616305 ttcattagattgtcgatatccatct 3616281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 43489189 - 43489065
Alignment:
Q  110 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43489189 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 43489090  T
Q  210 ttcattagattgtcgatgtccatct 234  Q
    ||||||||||||||||| |||||||    
T  43489089 ttcattagattgtcgatatccatct 43489065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 2027565 - 2027441
Alignment:
Q  110 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2027565 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccaaacatgcttcattttcacctgggtag 2027466  T
Q  210 ttcattagattgtcgatgtccatct 234  Q
    ||||||||||||||||| |||||||    
T  2027465 ttcattagattgtcgatatccatct 2027441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 110 - 234
Target Start/End: Original strand, 37037875 - 37037999
Alignment:
Q  110 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  37037875 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcatctgggtag 37037974  T
Q  210 ttcattagattgtcgatgtccatct 234  Q
    ||||||||||||||||| |||||||    
T  37037975 ttcattagattgtcgatatccatct 37037999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 23416782 - 23416658
Alignment:
Q  110 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  23416782 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctaaacctccgaacatgcttcattttcacctgggtag 23416683  T
Q  210 ttcattagattgtcgatgtccatct 234  Q
    |||||||||||||| || |||||||    
T  23416682 ttcattagattgtcaatatccatct 23416658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 110 - 234
Target Start/End: Original strand, 37827674 - 37827798
Alignment:
Q  110 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 209  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  37827674 atcatcttcatcgtcatcctctgcattgttctcaatgatagtacgcacaatatattctaaactctgaacctccgaacatgcttcatttgcacctgggtag 37827773  T
Q  210 ttcattagattgtcgatgtccatct 234  Q
    ||||||||||||||||| |||||||    
T  37827774 ttcattagattgtcgatatccatct 37827798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 38954690 - 38954600
Alignment:
Q  16 gacatcatttggatgggtcctttaatagtgagtgcaggggaatgagttgtcgagttgcggatggtaatattagagacaagaccggaacctc 106  Q
    |||||||||| ||||||||||| |||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  38954690 gacatcattttgatgggtccttcaatagttagtgcaggggaatgagatgtcgagttacggatggtaatattagagacaagaccggaacctc 38954600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 121; Significance: 4e-62; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 110 - 234
Target Start/End: Original strand, 1084692 - 1084816
Alignment:
Q  110 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1084692 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 1084791  T
Q  210 ttcattagattgtcgatgtccatct 234  Q
    ||||||||||||||||| |||||||    
T  1084792 ttcattagattgtcgatatccatct 1084816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 14678196 - 14678072
Alignment:
Q  110 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14678196 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 14678097  T
Q  210 ttcattagattgtcgatgtccatct 234  Q
    ||||||||||||||||| |||||||    
T  14678096 ttcattagattgtcgatatccatct 14678072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 110 - 234
Target Start/End: Original strand, 17195032 - 17195156
Alignment:
Q  110 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17195032 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 17195131  T
Q  210 ttcattagattgtcgatgtccatct 234  Q
    ||||||||||||||||| |||||||    
T  17195132 ttcattagattgtcgatatccatct 17195156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 45108015 - 45107891
Alignment:
Q  110 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45108015 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 45107916  T
Q  210 ttcattagattgtcgatgtccatct 234  Q
    ||||||||||||||||| |||||||    
T  45107915 ttcattagattgtcgatatccatct 45107891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 21398355 - 21398231
Alignment:
Q  110 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 209  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21398355 atcatcttcgtcatcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 21398256  T
Q  210 ttcattagattgtcgatgtccatct 234  Q
    ||||||||||||||||| |||||||    
T  21398255 ttcattagattgtcgatatccatct 21398231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 110 - 226
Target Start/End: Complemental strand, 5926965 - 5926849
Alignment:
Q  110 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 209  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5926965 atcatcttcgttgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 5926866  T
Q  210 ttcattagattgtcgat 226  Q
    |||||||||||||||||    
T  5926865 ttcattagattgtcgat 5926849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 110 - 234
Target Start/End: Original strand, 27182156 - 27182281
Alignment:
Q  110 atcatcttcgt-cgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggta 208  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27182156 atcatcttcgttcgtcatcctctgcattgttctcaatgatagtacacacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggta 27182255  T
Q  209 gttcattagattgtcgatgtccatct 234  Q
    |||||||||||||||||| |||||||    
T  27182256 gttcattagattgtcgatatccatct 27182281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 110 - 234
Target Start/End: Original strand, 49545771 - 49545895
Alignment:
Q  110 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  49545771 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctaaacctccgaacatgcttcattttcacctgggtag 49545870  T
Q  210 ttcattagattgtcgatgtccatct 234  Q
    ||||||| ||| ||||| |||||||    
T  49545871 ttcattaaattttcgatatccatct 49545895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 149 - 234
Target Start/End: Complemental strand, 10486531 - 10486446
Alignment:
Q  149 agtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtagttcattagattgtcgatgtccatct 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  10486531 agtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctaggtagttcattagattgtcgatatccatct 10486446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 110 - 204
Target Start/End: Complemental strand, 54072357 - 54072263
Alignment:
Q  110 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctg 204  Q
    ||||||||||  ||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||| ||||||  ||||||||||||||    
T  54072357 atcatcttcgctgtcatcctctgcattgttctcaatgatagtacctacaatatcttttaaactctgaacctctgaacatagttcattttcacctg 54072263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 15056069 - 15056005
Alignment:
Q  110 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactct 174  Q
    |||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  15056069 atcatctttgtcgtcatcctctgcattgttgtcaatgatagtacccacaatatcttctaaactct 15056005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 110 - 154
Target Start/End: Complemental strand, 10489483 - 10489439
Alignment:
Q  110 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacg 154  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  10489483 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacg 10489439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 121; Significance: 4e-62; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 110 - 234
Target Start/End: Original strand, 44552400 - 44552524
Alignment:
Q  110 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44552400 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 44552499  T
Q  210 ttcattagattgtcgatgtccatct 234  Q
    ||||||||||||||||| |||||||    
T  44552500 ttcattagattgtcgatatccatct 44552524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 34946644 - 34946520
Alignment:
Q  110 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  34946644 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacatgggtag 34946545  T
Q  210 ttcattagattgtcgatgtccatct 234  Q
    ||||||||||||||||| |||||||    
T  34946544 ttcattagattgtcgatatccatct 34946520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 110 - 234
Target Start/End: Original strand, 38517262 - 38517386
Alignment:
Q  110 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 209  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38517262 atcatcttcgtcgtcattctctgcattattctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 38517361  T
Q  210 ttcattagattgtcgatgtccatct 234  Q
    ||||||||||||||||| |||||||    
T  38517362 ttcattagattgtcgatatccatct 38517386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 121; Significance: 4e-62; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 3536015 - 3535891
Alignment:
Q  110 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3536015 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 3535916  T
Q  210 ttcattagattgtcgatgtccatct 234  Q
    ||||||||||||||||| |||||||    
T  3535915 ttcattagattgtcgatatccatct 3535891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 12534077 - 12533953
Alignment:
Q  110 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12534077 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 12533978  T
Q  210 ttcattagattgtcgatgtccatct 234  Q
    ||||||||||||||||| |||||||    
T  12533977 ttcattagattgtcgatatccatct 12533953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 110 - 234
Target Start/End: Original strand, 7355616 - 7355740
Alignment:
Q  110 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 209  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7355616 atcatctttgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 7355715  T
Q  210 ttcattagattgtcgatgtccatct 234  Q
    ||||||||||||||||| |||||||    
T  7355716 ttcattagattgtcgatatccatct 7355740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 2273701 - 2273577
Alignment:
Q  110 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 209  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2273701 atcatcttcgtcgccatcctctgcattgttctcaataatagtacgcacaatatcttataaactctgaacctccgaacatgcttcattttcacctgggtag 2273602  T
Q  210 ttcattagattgtcgatgtccatct 234  Q
    ||||||||||||||||| |||||||    
T  2273601 ttcattagattgtcgatatccatct 2273577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 110 - 174
Target Start/End: Original strand, 43380264 - 43380328
Alignment:
Q  110 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactct 174  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  43380264 atcatcttcgtcgtaatcctctgcattgttctcaatgatagtacccacaatatcttctaaactct 43380328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 110 - 234
Target Start/End: Original strand, 16640924 - 16641048
Alignment:
Q  110 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16640924 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 16641023  T
Q  210 ttcattagattgtcgatgtccatct 234  Q
    ||||||||||||||||| |||||||    
T  16641024 ttcattagattgtcgatatccatct 16641048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 110 - 234
Target Start/End: Original strand, 22146814 - 22146938
Alignment:
Q  110 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  22146814 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgtttcattttcacctgggtag 22146913  T
Q  210 ttcattagattgtcgatgtccatct 234  Q
    ||||||||||||||||| |||||||    
T  22146914 ttcattagattgtcgatatccatct 22146938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 41775029 - 41774905
Alignment:
Q  110 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  41775029 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctaggtag 41774930  T
Q  210 ttcattagattgtcgatgtccatct 234  Q
    ||||||||||||||||| |||||||    
T  41774929 ttcattagattgtcgatatccatct 41774905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 8363529 - 8363404
Alignment:
Q  110 atcatcttcgt-cgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggta 208  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8363529 atcatcttcgttcgtcatcctctgcattgttctcaatgatagtacacacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggta 8363430  T
Q  209 gttcattagattgtcgatgtccatct 234  Q
    |||||||||||||||||| |||||||    
T  8363429 gttcattagattgtcgatatccatct 8363404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 29650672 - 29650608
Alignment:
Q  110 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactct 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29650672 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactct 29650608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 110 - 234
Target Start/End: Original strand, 30703205 - 30703329
Alignment:
Q  110 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  30703205 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactccgaacctccgaacatgcttcattttcacctgggtag 30703304  T
Q  210 ttcattagattgtcgatgtccatct 234  Q
    ||||||||||||||||| |||||||    
T  30703305 ttcattagattgtcgatatccatct 30703329  T

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Target: chr6; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 14220089 - 14219965
Alignment:
Q  110 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 209  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14220089 atcatcttcgtcgtcatcctctgctttgttctcaatgatagtacgtacaatatcttctaaactctgaacctccgaacatgcttcattttcacctgggtag 14219990  T
Q  210 ttcattagattgtcgatgtccatct 234  Q
    ||||||||||||||||| |||||||    
T  14219989 ttcattagattgtcgatatccatct 14219965  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 110 - 174
Target Start/End: Original strand, 5309439 - 5309503
Alignment:
Q  110 atcatcttcgtcgtcatcctctgcattgttctcaatgatagtacgcacaatatcttctaaactct 174  Q
    |||||||||| ||| ||||||||||||||||||||||||||||| || |||||||||||||||||    
T  5309439 atcatcttcgccgtaatcctctgcattgttctcaatgatagtacccataatatcttctaaactct 5309503  T

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