View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9795A_low_283 (Length: 245)
Name: NF9795A_low_283
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_283 |
 | |
|
| [»] scaffold0041 (2 HSPs) |
| |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: scaffold0041 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 6 - 245
Target Start/End: Original strand, 87358 - 87597
Alignment:
| Q |
6 |
actgagatgaatatggagtcaaagaagaaatttaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgc |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
87358 |
actgagatgaatatggagtcaaagaagaaattgaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgc |
87457 |
T |
|
| Q |
106 |
cagaagttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
87458 |
cagaagttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcat |
87557 |
T |
|
| Q |
206 |
tccatgtagagttgaagctataagatatatggctactcat |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
87558 |
tccatgtagagttgaagctataagatatatggctaatcat |
87597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 6 - 245
Target Start/End: Original strand, 95388 - 95613
Alignment:
| Q |
6 |
actgagatgaatatggagtcaaagaagaaatttaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgc |
105 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||| |||||||||||||||| ||||||| |
|
|
| T |
95388 |
actgagatgaatatggagtcaaaaaagaaattgaaaaatgtgaacaagagtgtgg--------------catgccattgcaggaggaatggtgcaaatgc |
95473 |
T |
|
| Q |
106 |
cagaagttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcat |
205 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
95474 |
cagaagttaactcacaggtcttttacttccctcagggtcacgccgagcatgcttgtgagccggtgaatttcagtgcttactccaaaattccatctttcat |
95573 |
T |
|
| Q |
206 |
tccatgtagagttgaagctataagatatatggctactcat |
245 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
95574 |
tccatgtagagttgaagatataagatatatggctaatcat |
95613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 6 - 245
Target Start/End: Complemental strand, 40878925 - 40878686
Alignment:
| Q |
6 |
actgagatgaatatggagtcaaagaagaaatttaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgc |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40878925 |
actgagatgaatatggagtcaaagaagaaattgaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgc |
40878826 |
T |
|
| Q |
106 |
cagaagttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40878825 |
cagaagttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcat |
40878726 |
T |
|
| Q |
206 |
tccatgtagagttgaagctataagatatatggctactcat |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
40878725 |
tccatgtagagttgaagctataagatatatggctaatcat |
40878686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 6 - 245
Target Start/End: Complemental strand, 40870894 - 40870669
Alignment:
| Q |
6 |
actgagatgaatatggagtcaaagaagaaatttaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgc |
105 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||| |||||||||||||||| ||||||| |
|
|
| T |
40870894 |
actgagatgaatatggagtcaaaaaagaaattgaaaaatgtgaacaagagtgtgg--------------catgccattgcaggaggaatggtgcaaatgc |
40870809 |
T |
|
| Q |
106 |
cagaagttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcat |
205 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
40870808 |
cagaagttaactcacaggtcttttacttccctcagggtcacgccgagcatgcttgtgagccggtgaatttcagtgcttactccaaaattccatctttcat |
40870709 |
T |
|
| Q |
206 |
tccatgtagagttgaagctataagatatatggctactcat |
245 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
40870708 |
tccatgtagagttgaagatataagatatatggctaatcat |
40870669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University