View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9795A_low_285 (Length: 245)

Name: NF9795A_low_285
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9795A_low_285
NF9795A_low_285
[»] chr5 (2 HSPs)
chr5 (12-205)||(5538608-5538801)
chr5 (150-203)||(38472251-38472304)
[»] chr2 (9 HSPs)
chr2 (82-202)||(19038249-19038370)
chr2 (82-185)||(19038013-19038116)
chr2 (142-202)||(13968972-13969032)
chr2 (10-76)||(3470694-3470760)
chr2 (135-200)||(37349801-37349866)
chr2 (30-76)||(19038133-19038179)
chr2 (9-75)||(19038388-19038454)
chr2 (150-202)||(4108905-4108957)
chr2 (150-202)||(45109481-45109533)
[»] chr7 (5 HSPs)
chr7 (82-192)||(18573679-18573790)
chr7 (135-203)||(17835118-17835186)
chr7 (156-202)||(12611862-12611908)
chr7 (30-76)||(18573614-18573660)
chr7 (156-202)||(25248880-25248926)
[»] chr3 (8 HSPs)
chr3 (82-202)||(8820460-8820580)
chr3 (13-202)||(20000538-20000740)
chr3 (125-200)||(23459301-23459376)
chr3 (135-202)||(17441789-17441856)
chr3 (86-119)||(47437633-47437666)
chr3 (83-202)||(7850544-7850662)
chr3 (150-200)||(17472049-17472099)
chr3 (12-76)||(8820599-8820663)
[»] chr8 (1 HSPs)
chr8 (82-202)||(38809600-38809721)
[»] chr1 (7 HSPs)
chr1 (82-202)||(42606606-42606724)
chr1 (82-202)||(3400537-3400658)
chr1 (112-203)||(11801363-11801454)
chr1 (30-76)||(3400472-3400518)
chr1 (10-76)||(27121243-27121309)
chr1 (82-202)||(13117319-13117437)
chr1 (31-76)||(13117254-13117299)
[»] chr6 (1 HSPs)
chr6 (149-202)||(34220015-34220068)
[»] scaffold0001 (1 HSPs)
scaffold0001 (82-140)||(510072-510130)
[»] chr4 (3 HSPs)
chr4 (150-202)||(24826668-24826720)
chr4 (135-202)||(31954802-31954869)
chr4 (150-202)||(25243482-25243534)


Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 12 - 205
Target Start/End: Complemental strand, 5538801 - 5538608
Alignment:
Q  12 gacatcaaaagaaatgctcattaagtcaacaaagtgaggtctataaaaggagacaactagagagcgggggattatcttgaacaatgtatctttcatctaa 111  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5538801 gacatccaaagaaatgctcattaagtcaacaaagtgagatctataaaaggagacaactagagagcgggggattatcttgaacaatgtatctttcatctaa 5538702  T
Q  112 gtcttattcataatgttcttggaactccatctaagacatttcattgagcagcttacctattgtaaataacttgtgtttacacacgtgaacacat 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5538701 gtcttattcataatgttcttggaactccatctaagacatttcattgagcagcttacctattgtaaataacttgtgtttacacacgtgaacacat 5538608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 203
Target Start/End: Original strand, 38472251 - 38472304
Alignment:
Q  150 tttcattgagcagcttacctattgtaaataacttgtgtttacacacgtgaacac 203  Q
    ||||| ||||||||| | || |||||| ||||||||||||||| ||||||||||    
T  38472251 tttcactgagcagctcatctgttgtaattaacttgtgtttacatacgtgaacac 38472304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 82 - 202
Target Start/End: Complemental strand, 19038370 - 19038249
Alignment:
Q  82 attatcttgaacaatgtatctttcatctaagtcttattcataatgttcttggaactccatctaagacatttcattgagcagcttacctattgtaaa-taa 180  Q
    ||||||||||||||||||| |||||| || |||||||||| | || |||||||| |||| ||| ||||||||||||||||||| |||| ||||||| |||    
T  19038370 attatcttgaacaatgtatttttcatatacgtcttattcagagtgctcttggaattccacctaggacatttcattgagcagctcacctgttgtaaattaa 19038271  T
Q  181 cttgtgtttacacacgtgaaca 202  Q
    |||||||||||| |||||||||    
T  19038270 cttgtgtttacatacgtgaaca 19038249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 82 - 185
Target Start/End: Complemental strand, 19038116 - 19038013
Alignment:
Q  82 attatcttgaacaatgtatctttcatctaagtcttattcataatgttcttggaactccatctaagacatttcattgagcagcttacctattgtaaataac 181  Q
    ||||||||||||||||||| |||||||||||||||||||| | || ||||| || ||||  || ||||||||| ||| || || |||| || ||| ||||    
T  19038116 attatcttgaacaatgtatttttcatctaagtcttattcagagtgctcttgaaattccacttaggacatttcactgatcaactcacctcttataattaac 19038017  T
Q  182 ttgt 185  Q
    ||||    
T  19038016 ttgt 19038013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 202
Target Start/End: Original strand, 13968972 - 13969032
Alignment:
Q  142 ctaagacatttcattgagcagcttacctattgtaaataacttgtgtttacacacgtgaaca 202  Q
    ||||||| ||||||||||||||| || | |||||| ||||||||||||||| |||||||||    
T  13968972 ctaagacgtttcattgagcagctcacttgttgtaattaacttgtgtttacatacgtgaaca 13969032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 3470694 - 3470760
Alignment:
Q  10 tggacatcaaaagaaatgctcattaagtcaacaaagtgaggtctataaaaggagacaactagagagc 76  Q
    |||||||| |||| || || ||||| ||||| |||| |||| |||||||||||||||||||||||||    
T  3470694 tggacatccaaaggaaggcccattaggtcaagaaagcgaggcctataaaaggagacaactagagagc 3470760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 200
Target Start/End: Original strand, 37349801 - 37349866
Alignment:
Q  135 actccatctaagacatttcattgagcagcttacctattgtaaataacttgtgtttacacacgtgaa 200  Q
    |||||| ||| ||| ||||| ||||||||| |||| |||||| ||||||||||||||| |||||||    
T  37349801 actccacctaggacgtttcactgagcagctcacctgttgtaattaacttgtgtttacatacgtgaa 37349866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 19038179 - 19038133
Alignment:
Q  30 cattaagtcaacaaagtgaggtctataaaaggagacaactagagagc 76  Q
    ||||| ||||| |||| |||||||||||||||||||||||| |||||    
T  19038179 cattaggtcaagaaagcgaggtctataaaaggagacaactatagagc 19038133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 19038454 - 19038388
Alignment:
Q  9 atggacatcaaaagaaatgctcattaagtcaacaaagtgaggtctataaaaggagacaactagagag 75  Q
    ||||||||| || |||| || ||||| ||||| |||| ||| |||||||||| ||||||||||||||    
T  19038454 atggacatccaacgaaaggcccattaggtcaagaaagcgagatctataaaagtagacaactagagag 19038388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 202
Target Start/End: Complemental strand, 4108957 - 4108905
Alignment:
Q  150 tttcattgagcagcttacctattgtaaataacttgtgtttacacacgtgaaca 202  Q
    ||||| ||||||||| |||| |||||| ||||||||||||||| |||| ||||    
T  4108957 tttcactgagcagctcacctgttgtaattaacttgtgtttacatacgtaaaca 4108905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 202
Target Start/End: Complemental strand, 45109533 - 45109481
Alignment:
Q  150 tttcattgagcagcttacctattgtaaataacttgtgtttacacacgtgaaca 202  Q
    ||||| ||||||||| |||| |||||| || |||||||||||| |||||||||    
T  45109533 tttcactgagcagctcacctgttgtaattatcttgtgtttacatacgtgaaca 45109481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 82 - 192
Target Start/End: Original strand, 18573679 - 18573790
Alignment:
Q  82 attatcttgaacaatgtatctttcatctaagtcttattcataatgttcttggaactccatctaagacatttcattgagcagcttacctattgtaaataac 181  Q
    ||||||||||||||||||| |||||||||||||||||||| | || |||||||| || | |||||||||||||||||||| || |||| |||||| ||||    
T  18573679 attatcttgaacaatgtatttttcatctaagtcttattcaaagtgctcttggaattctacctaagacatttcattgagcaactcaccttttgtaattaac 18573778  T
Q  182 -ttgtgtttaca 192  Q
     |||||||||||    
T  18573779 tttgtgtttaca 18573790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 17835118 - 17835186
Alignment:
Q  135 actccatctaagacatttcattgagcagcttacctattgtaaataacttgtgtttacacacgtgaacac 203  Q
    |||||| ||| ||| ||| | ||||||||| |||| |||||| ||||||||||||||| ||||||||||    
T  17835118 actccacctaggacgttttactgagcagctcacctgttgtaattaacttgtgtttacatacgtgaacac 17835186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 12611908 - 12611862
Alignment:
Q  156 tgagcagcttacctattgtaaataacttgtgtttacacacgtgaaca 202  Q
    ||||||||| |||| |||||| ||||||||||||||| |||||||||    
T  12611908 tgagcagctcacctgttgtaattaacttgtgtttacatacgtgaaca 12611862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 18573614 - 18573660
Alignment:
Q  30 cattaagtcaacaaagtgaggtctataaaaggagacaactagagagc 76  Q
    ||||| ||||| ||||||||| ||||||||||||||||||| |||||    
T  18573614 cattaggtcaagaaagtgaggcctataaaaggagacaactaaagagc 18573660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 25248926 - 25248880
Alignment:
Q  156 tgagcagcttacctattgtaaataacttgtgtttacacacgtgaaca 202  Q
    ||||||||| |||| |||||| ||||||||||||||| |||||||||    
T  25248926 tgagcagctcacctgttgtaattaacttgtgtttacatacgtgaaca 25248880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 202
Target Start/End: Complemental strand, 8820580 - 8820460
Alignment:
Q  82 attatcttgaacaatgtatctttcatctaagtcttattcataatgttcttggaactccatctaagacatttcattgagcagcttacctattgtaaataac 181  Q
    ||||||||||||||||||| |||||||||||||||||||| | || |||||||| | ||  || ||||||  | ||||||||| |||| |||||| ||||    
T  8820580 attatcttgaacaatgtatttttcatctaagtcttattcagagtgctcttggaatttcacataggacattctactgagcagctcacctgttgtaattaac 8820481  T
Q  182 ttgtgtttacacacgtgaaca 202  Q
    |||||||| || |||||||||    
T  8820480 ttgtgttttcatacgtgaaca 8820460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 202
Target Start/End: Original strand, 20000538 - 20000740
Alignment:
Q  13 acatcaaaagaaatgctcattaagtcaacaaagtgaggtctataaaaggagacaactagagagcg---ggggatt---------atcttgaacaatgtat 100  Q
    ||||| ||||||| || ||||| ||||| ||||||| | ||||||||||||||||||||||||||   ||||||          ||||| |||| |||||    
T  20000538 acatccaaagaaaggcccattaggtcaagaaagtgatgcctataaaaggagacaactagagagcgtaaggggatcgaatccatgatcttaaacagtgtat 20000637  T
Q  101 ctttcatctaagtcttattcataatgttcttggaactccatctaagacatttcattgagcagcttacctattgtaa-ataacttgtgtttacacacgtga 199  Q
     || ||||||||||||||||| | || ||||| || |||| |||||||||||||  || ||||| | |||||||||  ||||||||||||||| ||||||    
T  20000638 tttacatctaagtcttattcagagtgctcttgaaattccacctaagacatttcaccgaacagctcatctattgtaatttaacttgtgtttacatacgtga 20000737  T
Q  200 aca 202  Q
    |||    
T  20000738 aca 20000740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 125 - 200
Target Start/End: Complemental strand, 23459376 - 23459301
Alignment:
Q  125 tgttcttggaactccatctaagacatttcattgagcagcttacctattgtaaataacttgtgtttacacacgtgaa 200  Q
    ||||||||||| | || ||||||||||||| | |||| || ||||||||||| ||||||||||||||| |||||||    
T  23459376 tgttcttggaattgcacctaagacatttcactcagcaactcacctattgtaattaacttgtgtttacatacgtgaa 23459301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 202
Target Start/End: Original strand, 17441789 - 17441856
Alignment:
Q  135 actccatctaagacatttcattgagcagcttacctattgtaaataacttgtgtttacacacgtgaaca 202  Q
    |||||| ||| ||| ||||| ||||||||| |||| |||||| ||||||||||||||| |||||||||    
T  17441789 actccacctaggacgtttcactgagcagctcacctgttgtaattaacttgtgtttacatacgtgaaca 17441856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 47437666 - 47437633
Alignment:
Q  86 tcttgaacaatgtatctttcatctaagtcttatt 119  Q
    ||||||||||||||||||||||||||||||||||    
T  47437666 tcttgaacaatgtatctttcatctaagtcttatt 47437633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 202
Target Start/End: Complemental strand, 7850662 - 7850544
Alignment:
Q  83 ttatcttgaacaatgtatctttcatctaagtcttattcataatgttcttggaactccatctaagacatttcattgagcagcttacctattgtaaataact 182  Q
    |||||||||||  ||||| |||||||||||||||||||| |||| |||||||| |||| | | | |||||||   | || || || |||||||| |||||    
T  7850662 ttatcttgaaccgtgtat-tttcatctaagtcttattcagaatgctcttggaattccacccagggcatttcacataacaactcacttattgtaattaact 7850564  T
Q  183 tgtgtttacacacgtgaaca 202  Q
    || ||||||| |||| ||||    
T  7850563 tgagtttacatacgtcaaca 7850544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 200
Target Start/End: Original strand, 17472049 - 17472099
Alignment:
Q  150 tttcattgagcagcttacctattgtaaataacttgtgtttacacacgtgaa 200  Q
    ||||| ||||||||| |||| |||||| ||||||||||||||| |||||||    
T  17472049 tttcactgagcagctcacctgttgtaattaacttgtgtttacatacgtgaa 17472099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 8820663 - 8820599
Alignment:
Q  12 gacatcaaaagaaatgctcattaagtcaacaaagtgaggtctataaaaggagacaactagagagc 76  Q
    |||||| ||||||| || ||||| || || ||||||||  ||||||||||||||| |||||||||    
T  8820663 gacatccaaagaaaggcccattaggtgaagaaagtgagacctataaaaggagacacctagagagc 8820599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 82 - 202
Target Start/End: Complemental strand, 38809721 - 38809600
Alignment:
Q  82 attatcttgaacaatgtatctttcatctaagtcttattcataatgttcttggaactccatctaagacatttcattgagcagcttacctattgtaa-ataa 180  Q
    ||||||||||||  ||||| |||||||||||||||||||| | || |||||||| |||| ||| |||||||||  |||||||| |||| ||| ||  |||    
T  38809721 attatcttgaactgtgtatttttcatctaagtcttattcaaagtgctcttggaattccacctaggacatttcaccgagcagctcacctgttgaaatttaa 38809622  T
Q  181 cttgtgtttacacacgtgaaca 202  Q
    |||||||||||| |||||||||    
T  38809621 cttgtgtttacatacgtgaaca 38809600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 82 - 202
Target Start/End: Original strand, 42606606 - 42606724
Alignment:
Q  82 attatcttgaacaatgtatctttcatctaagtcttattcataatgttcttggaactccatctaagacatttcattgagcagcttacctattgtaaataac 181  Q
    |||||||||||| |||||| |||||| |||||| |||||| | || ||||| || |||| |||  ||||||||||||| ||||||| | |||||| ||||    
T  42606606 attatcttgaacgatgtat-tttcatttaagtcctattcacagtgctcttg-aattccacctagaacatttcattgagtagcttacatgttgtaattaac 42606703  T
Q  182 ttgtgtttacacacgtgaaca 202  Q
    |||||||||||| ||||||||    
T  42606704 ttgtgtttacacgcgtgaaca 42606724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 202
Target Start/End: Original strand, 3400537 - 3400658
Alignment:
Q  82 attatcttgaacaatgtatctttcatctaagtcttattcataatgttcttggaactccatctaagacatttcattgagcagcttacctattgtaa-ataa 180  Q
    |||||||| |||  ||||| || |||||||| |||||||| | || ||||| || |||| ||| |||||||||  |||||||| |||||||||||  |||    
T  3400537 attatcttaaacggtgtattttacatctaagccttattcagagtgctcttgaaattccacctaggacatttcaccgagcagctcacctattgtaatttaa 3400636  T
Q  181 cttgtgtttacacacgtgaaca 202  Q
    |||||||||||| |||||||||    
T  3400637 cttgtgtttacatacgtgaaca 3400658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 203
Target Start/End: Original strand, 11801363 - 11801454
Alignment:
Q  112 gtcttattcataatgttcttggaactccatctaagacatttcattgagcagcttacctattgtaaataacttgtgtttacacacgtgaacac 203  Q
    |||||||||| |||| ||||| || |||| ||||||||||||| ||| | ||| |||| || ||| ||||||||||| ||| ||||||||||    
T  11801363 gtcttattcaaaatgctcttgaaattccacctaagacatttcactgaaccgctcacctgttataattaacttgtgttcacatacgtgaacac 11801454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 3400472 - 3400518
Alignment:
Q  30 cattaagtcaacaaagtgaggtctataaaaggagacaactagagagc 76  Q
    ||||| ||||| ||||||||| |||||||||||||||||||||||||    
T  3400472 cattaggtcaagaaagtgaggcctataaaaggagacaactagagagc 3400518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 27121243 - 27121309
Alignment:
Q  10 tggacatcaaaagaaatgctcattaagtcaacaaagtgaggtctataaaaggagacaactagagagc 76  Q
    |||||||  ||||||| || ||||| ||||| |||||||| |||||||||||||||| |||||||||    
T  27121243 tggacatacaaagaaaggcccattaggtcaataaagtgagatctataaaaggagacacctagagagc 27121309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 202
Target Start/End: Original strand, 13117319 - 13117437
Alignment:
Q  82 attatcttgaacaatgtatctttcatctaagtcttattcataatgttcttggaactccatctaagacatttcattgagcagcttacctattgtaaataac 181  Q
    ||||||||||||||||||| ||||||||| |||||||||| | |  ||||||||  ||| | | || |||||| ||||||||| |  |  ||||| ||||    
T  13117319 attatcttgaacaatgtat-tttcatcta-gtcttattcagagtactcttggaatcccaccaaggatatttcactgagcagctcatatggtgtaattaac 13117416  T
Q  182 ttgtgtttacacacgtgaaca 202  Q
    ||||||||||| |||||||||    
T  13117417 ttgtgtttacatacgtgaaca 13117437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 13117254 - 13117299
Alignment:
Q  31 attaagtcaacaaagtgaggtctataaaaggagacaactagagagc 76  Q
    |||| ||||| ||||||||| ||||||||||||||| |||||||||    
T  13117254 attaggtcaagaaagtgaggcctataaaaggagacatctagagagc 13117299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 149 - 202
Target Start/End: Complemental strand, 34220068 - 34220015
Alignment:
Q  149 atttcattgagcagcttacctattgtaaataacttgtgtttacacacgtgaaca 202  Q
    ||||||||||||| |||||||||||||| ||||||||||||||| |||||||||    
T  34220068 atttcattgagcaacttacctattgtaattaacttgtgtttacatacgtgaaca 34220015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 140
Target Start/End: Original strand, 510072 - 510130
Alignment:
Q  82 attatcttgaacaatgtatctttcatctaagtcttattcataatgttcttggaactcca 140  Q
    ||||||||||||||||||| |||||||||||||||||||| | || |||||||| ||||    
T  510072 attatcttgaacaatgtatttttcatctaagtcttattcaaagtgctcttggaattcca 510130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 24826668 - 24826720
Alignment:
Q  150 tttcattgagcagcttacctattgtaaataacttgtgtttacacacgtgaaca 202  Q
    ||||||||||||||| |||| |||||| ||||||||||||||| |||||||||    
T  24826668 tttcattgagcagctcacctgttgtaattaacttgtgtttacatacgtgaaca 24826720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 202
Target Start/End: Original strand, 31954802 - 31954869
Alignment:
Q  135 actccatctaagacatttcattgagcagcttacctattgtaaataacttgtgtttacacacgtgaaca 202  Q
    |||||| ||| ||| ||||| ||||||||| |||| |||||| ||||||||||||||| |||| ||||    
T  31954802 actccacctaggacgtttcactgagcagctcacctgttgtaattaacttgtgtttacatacgtaaaca 31954869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 25243482 - 25243534
Alignment:
Q  150 tttcattgagcagcttacctattgtaaataacttgtgtttacacacgtgaaca 202  Q
    ||||| ||||||||| |||| |||||| ||| ||||||||||| |||||||||    
T  25243482 tttcactgagcagctcacctgttgtaattaatttgtgtttacatacgtgaaca 25243534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University