View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9795A_low_286 (Length: 245)
Name: NF9795A_low_286
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_286 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 34186875 - 34187101
Alignment:
| Q |
19 |
attcacacgaagagcaagtgctgaaagtaactcaagatgagacaagtgctggccgtagccgcggaagaggtggctttcgaggtggagctactcgaggaag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34186875 |
attcacacgaagagcaagtgctgaaagtaactcaagatgagacaagtgctggccgtagccgcggaagaggtggctttcgaggtggagctactcgaggaag |
34186974 |
T |
|
| Q |
119 |
aggcagaggaggtagaggaggaaaggcagcagtggagtgttattattgccatgagtttggacatttccagtatgaatgcccaaataaacccctgaacaac |
218 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34186975 |
aggcaaaggaggtagaggaggaaaggcagcagtggagtgttattattgccatgagtttggacatttccagtatgaatgcccaaataaacccctgaacaac |
34187074 |
T |
|
| Q |
219 |
accgcaaattatgctgagaccaacgag |
245 |
Q |
| |
|
||||||||||||| ||||||||||||| |
|
|
| T |
34187075 |
accgcaaattatgttgagaccaacgag |
34187101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University