View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_287 (Length: 245)
Name: NF9795A_low_287
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_287 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 48142102 - 48141876
Alignment:
| Q |
1 |
ggcagcaaacaaacgatgaatagttacaaatttaggtgtcataaacaacaatcacgagcagcaaggcaaataacaaagtaacnnnnnnngtaaagaatag |
100 |
Q |
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| T |
48142102 |
ggcaacaaacaaactatgaatagttacaaatttaggtgtcataaacatcaatcacgagcagcaaggcaaataacaaagtaacaaaaaaagtaaagaatag |
48142003 |
T |
|
| Q |
101 |
agctttttcaaaaggaataaagtatatagtagaaagtagaaacttaaataaagttaaaagtagaccactttgctttagcaactcattcatttatatgcct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
48142002 |
agctttttcaaaaggaataaagtatatagtagaaagtagaaacttaaataaagttaaaagtagaacactttgctttagcaattcattcatttatatgcct |
48141903 |
T |
|
| Q |
201 |
gatttcatgtgataaggaacggtatgc |
227 |
Q |
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|||| |||||||||||||||||||||| |
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| T |
48141902 |
gattgcatgtgataaggaacggtatgc |
48141876 |
T |
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