View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9795A_low_3 (Length: 534)

Name: NF9795A_low_3
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9795A_low_3
NF9795A_low_3
[»] chr1 (36 HSPs)
chr1 (15-534)||(31745095-31745613)
chr1 (317-463)||(40377012-40377158)
chr1 (316-463)||(7549813-7549960)
chr1 (325-438)||(36393479-36393592)
chr1 (317-438)||(50974564-50974685)
chr1 (331-463)||(45584509-45584641)
chr1 (317-463)||(31652593-31652738)
chr1 (316-463)||(44719151-44719298)
chr1 (346-438)||(4039621-4039713)
chr1 (317-438)||(5851530-5851649)
chr1 (333-439)||(25302066-25302172)
chr1 (362-463)||(25095579-25095680)
chr1 (325-460)||(34596118-34596250)
chr1 (352-440)||(45753443-45753531)
chr1 (317-411)||(12148289-12148383)
chr1 (354-463)||(34445639-34445748)
chr1 (325-433)||(12636305-12636414)
chr1 (325-438)||(40203076-40203189)
chr1 (355-438)||(5115634-5115717)
chr1 (354-460)||(28672315-28672420)
chr1 (319-440)||(5787434-5787554)
chr1 (324-406)||(42850094-42850176)
chr1 (331-408)||(50222611-50222688)
chr1 (351-438)||(33744159-33744246)
chr1 (317-412)||(48947225-48947320)
chr1 (322-463)||(13954126-13954271)
chr1 (351-433)||(39241430-39241512)
chr1 (351-407)||(48253319-48253375)
chr1 (334-413)||(44442270-44442349)
chr1 (352-437)||(3338051-3338137)
chr1 (385-439)||(5597710-5597764)
chr1 (401-463)||(27396102-27396164)
chr1 (318-416)||(50328308-50328405)
chr1 (351-444)||(14774091-14774184)
chr1 (362-435)||(28171517-28171590)
chr1 (354-398)||(15549642-15549686)
[»] chr4 (39 HSPs)
chr4 (317-463)||(49446583-49446730)
chr4 (324-463)||(44646522-44646661)
chr4 (325-438)||(44647879-44647992)
chr4 (318-462)||(42197007-42197150)
chr4 (342-463)||(6316821-6316942)
chr4 (332-444)||(9802621-9802732)
chr4 (320-435)||(20390023-20390138)
chr4 (331-446)||(42844030-42844145)
chr4 (317-437)||(41468080-41468200)
chr4 (341-435)||(33982423-33982517)
chr4 (323-413)||(44088286-44088376)
chr4 (351-459)||(25196110-25196218)
chr4 (328-421)||(50115059-50115149)
chr4 (362-463)||(40480205-40480306)
chr4 (351-438)||(12103864-12103951)
chr4 (325-438)||(24395194-24395308)
chr4 (332-422)||(49144774-49144864)
chr4 (317-398)||(38494748-38494829)
chr4 (384-463)||(28165362-28165442)
chr4 (352-434)||(39727579-39727660)
chr4 (351-463)||(50086432-50086543)
chr4 (362-435)||(34235910-34235984)
chr4 (332-398)||(36721591-36721657)
chr4 (320-429)||(49769110-49769219)
chr4 (362-421)||(31871090-31871149)
chr4 (333-463)||(52373050-52373181)
chr4 (316-398)||(41370157-41370239)
chr4 (333-422)||(1696194-1696283)
chr4 (365-438)||(53919863-53919936)
chr4 (346-438)||(27346293-27346385)
chr4 (365-440)||(5387947-5388022)
chr4 (335-437)||(51105918-51106020)
chr4 (384-433)||(27706954-27707003)
chr4 (332-440)||(27981368-27981477)
chr4 (402-463)||(44088211-44088272)
chr4 (334-463)||(52650697-52650826)
chr4 (351-439)||(11875452-11875539)
chr4 (364-463)||(23230272-23230372)
chr4 (351-463)||(47560596-47560707)
[»] chr3 (29 HSPs)
chr3 (317-463)||(34758899-34759045)
chr3 (317-462)||(54911988-54912133)
chr3 (317-438)||(18399149-18399271)
chr3 (325-462)||(30687077-30687214)
chr3 (324-463)||(27968170-27968307)
chr3 (324-463)||(52340118-52340257)
chr3 (333-451)||(38388694-38388812)
chr3 (352-463)||(28434481-28434591)
chr3 (362-463)||(779710-779810)
chr3 (346-463)||(38704969-38705086)
chr3 (329-427)||(7754772-7754871)
chr3 (325-438)||(4033026-4033138)
chr3 (325-416)||(19898100-19898191)
chr3 (351-418)||(55110042-55110109)
chr3 (325-462)||(25548196-25548333)
chr3 (360-434)||(43749507-43749581)
chr3 (352-422)||(53433211-53433281)
chr3 (380-435)||(1680511-1680566)
chr3 (351-442)||(2831538-2831629)
chr3 (354-438)||(39976721-39976804)
chr3 (343-418)||(54955783-54955859)
chr3 (385-439)||(11404700-11404754)
chr3 (362-412)||(40546348-40546398)
chr3 (131-192)||(9213512-9213572)
chr3 (426-463)||(29497248-29497285)
chr3 (418-463)||(29611990-29612035)
chr3 (351-407)||(21490626-21490682)
chr3 (362-426)||(30463992-30464056)
chr3 (380-420)||(37775371-37775411)
[»] chr5 (25 HSPs)
chr5 (320-463)||(8247037-8247180)
chr5 (318-463)||(3263717-3263862)
chr5 (317-460)||(19692696-19692840)
chr5 (324-435)||(5356295-5356406)
chr5 (317-437)||(35395184-35395304)
chr5 (318-463)||(10051700-10051845)
chr5 (322-463)||(28793305-28793446)
chr5 (324-461)||(1354345-1354481)
chr5 (317-435)||(22473432-22473551)
chr5 (342-438)||(21582367-21582463)
chr5 (354-456)||(14042440-14042542)
chr5 (340-437)||(31889611-31889709)
chr5 (380-463)||(4725897-4725979)
chr5 (322-408)||(142350-142436)
chr5 (386-440)||(22871913-22871967)
chr5 (354-439)||(3758194-3758279)
chr5 (354-426)||(26663642-26663714)
chr5 (354-426)||(26935237-26935309)
chr5 (325-460)||(14474998-14475133)
chr5 (385-463)||(27650866-27650944)
chr5 (384-437)||(37976444-37976497)
chr5 (385-439)||(12933327-12933381)
chr5 (380-426)||(24241210-24241256)
chr5 (354-411)||(24241039-24241096)
chr5 (316-376)||(43145883-43145943)
[»] chr2 (27 HSPs)
chr2 (316-463)||(8789826-8789973)
chr2 (318-463)||(44941072-44941216)
chr2 (320-463)||(20682990-20683133)
chr2 (324-438)||(8773670-8773784)
chr2 (342-440)||(4238341-4238438)
chr2 (317-440)||(18053008-18053130)
chr2 (325-438)||(42945012-42945125)
chr2 (352-463)||(6761751-6761862)
chr2 (325-435)||(2393038-2393148)
chr2 (324-438)||(34546265-34546379)
chr2 (325-451)||(42966938-42967066)
chr2 (353-425)||(1070568-1070639)
chr2 (318-463)||(5961954-5962101)
chr2 (82-165)||(10069229-10069312)
chr2 (349-463)||(3882586-3882700)
chr2 (368-460)||(433551-433643)
chr2 (387-439)||(8898861-8898913)
chr2 (351-463)||(18227092-18227204)
chr2 (354-437)||(2825983-2826066)
chr2 (384-451)||(13442636-13442703)
chr2 (351-435)||(35228732-35228816)
chr2 (380-438)||(3199541-3199599)
chr2 (333-440)||(7271769-7271880)
chr2 (325-462)||(14102297-14102435)
chr2 (354-439)||(31448315-31448400)
chr2 (380-433)||(45212057-45212110)
chr2 (351-439)||(33275918-33276005)
[»] chr7 (30 HSPs)
chr7 (317-437)||(30412910-30413030)
chr7 (317-463)||(8170001-8170147)
chr7 (317-427)||(48137789-48137899)
chr7 (344-438)||(42493703-42493798)
chr7 (332-463)||(47507580-47507711)
chr7 (321-459)||(38452146-38452283)
chr7 (336-433)||(2964049-2964146)
chr7 (331-463)||(16878677-16878809)
chr7 (325-436)||(44391426-44391537)
chr7 (321-397)||(46684550-46684626)
chr7 (349-440)||(5248088-5248179)
chr7 (346-438)||(2741168-2741260)
chr7 (322-440)||(15034793-15034911)
chr7 (327-435)||(43670409-43670517)
chr7 (317-392)||(47305516-47305592)
chr7 (354-443)||(676400-676488)
chr7 (352-451)||(37352436-37352535)
chr7 (362-446)||(33887887-33887971)
chr7 (319-463)||(36015002-36015141)
chr7 (323-437)||(36285774-36285887)
chr7 (380-463)||(45375399-45375483)
chr7 (351-398)||(15995924-15995971)
chr7 (351-460)||(35754017-35754126)
chr7 (335-411)||(44495238-44495314)
chr7 (351-398)||(14574768-14574815)
chr7 (362-469)||(35599837-35599944)
chr7 (351-440)||(31477085-31477175)
chr7 (351-464)||(10031945-10032058)
chr7 (388-441)||(25120218-25120271)
chr7 (325-392)||(27359398-27359466)
[»] chr8 (18 HSPs)
chr8 (317-463)||(31206280-31206426)
chr8 (325-433)||(38956884-38956992)
chr8 (316-440)||(5217747-5217869)
chr8 (333-438)||(45368729-45368834)
chr8 (324-437)||(5020051-5020162)
chr8 (325-436)||(20169716-20169827)
chr8 (322-463)||(9632898-9633040)
chr8 (384-466)||(33636685-33636767)
chr8 (334-460)||(39691121-39691247)
chr8 (325-438)||(7044329-7044442)
chr8 (363-463)||(24103087-24103187)
chr8 (371-463)||(39932721-39932813)
chr8 (325-463)||(10335020-10335159)
chr8 (400-438)||(36819755-36819793)
chr8 (388-463)||(37564393-37564468)
chr8 (400-462)||(2124141-2124203)
chr8 (403-463)||(5968377-5968437)
chr8 (351-463)||(22209376-22209488)
[»] chr6 (13 HSPs)
chr6 (317-438)||(12383008-12383129)
chr6 (325-438)||(16442075-16442188)
chr6 (340-435)||(8176324-8176419)
chr6 (354-437)||(12307821-12307904)
chr6 (334-463)||(31702747-31702874)
chr6 (352-460)||(7465451-7465558)
chr6 (319-394)||(22695473-22695549)
chr6 (391-462)||(22696000-22696071)
chr6 (336-434)||(35241410-35241509)
chr6 (325-438)||(6048268-6048381)
chr6 (136-188)||(32045160-32045211)
chr6 (354-435)||(26311807-26311889)
chr6 (362-463)||(30509286-30509387)
[»] scaffold0246 (1 HSPs)
scaffold0246 (362-463)||(18144-18245)


Alignment Details
Target: chr1 (Bit Score: 434; Significance: 0; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 15 - 534
Target Start/End: Original strand, 31745095 - 31745613
Alignment:
Q  15 atggacatcaaaaaagagtctataccaattaccaaaataatagactctctctagtcctatttaaaataaatatttaggttaacaaacgttaatggatcta 114  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  31745095 atggacctcaaaaaagagtctataccaattaccaaaataatatactctctctagtcctatttaaaataaatatttaggttaacaaacgttaatggatctg 31745194  T
Q  115 gtccaattatttaactagattcattaacttttgttgatttaaatgtctttttataaaaaggatcggagggagtattttatagtaagagaatgagattcaa 214  Q
    |||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||    
T  31745195 gtccaattatttaactagatacatcaacttttattgatttaaatgtctttttataaaaaggaccggatggagtattttatagtaagagaataagattcaa 31745294  T
Q  215 taatttattaaaaaatactaaaaatggtaattgtaaactttgaacatatttttaagcaccattttcgtccatatacttttcttgctgattaccaaggcac 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  31745295 taatttattaaaaaatactaaaaatggtaattgtaaactttgaacatatttttaagcaccattttggtccatatacttttcttgctgattaccgaggcac 31745394  T
Q  315 taggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataattta 414  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31745395 taggcactagttaaggcctttaaatagtaacttatcataaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataattta 31745494  T
Q  415 ttcttttagaatctttaaagagtgtctcggaggcactggttaacaagacaattaacnnnnnnnattaactcaacactgttcttgtcataattaaatattt 514  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  31745495 ttcttttagaatctttaaagagtgcctcggaggcactagttaacaagacaattaac-ttttttattaactcaacactgttcttgtcataattaaatattt 31745593  T
Q  515 ttgttatgacatgttttatt 534  Q
     |||||||||||||||||||    
T  31745594 atgttatgacatgttttatt 31745613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 317 - 463
Target Start/End: Complemental strand, 40377158 - 40377012
Alignment:
Q  317 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 416  Q
    ||||||||||||||||||||||| |||| ||||||||||||  ||||||||||||| || | ||||| |||||||||||||| ||||||||| |||| ||    
T  40377158 ggcactagttaaggcctttaaatggtaatttatcatgaaaagttgtgtaatcaatgaattgggaatcaaaatatttgacttttttataaaattatttctt 40377059  T
Q  417 cttttagaatctttaaagagtgtctcggaggcactggttaacaagac 463  Q
    ||||| ||||| |||||||||| |   | |||||| |||||||||||    
T  40377058 cttttggaatccttaaagagtgcccaaggggcactcgttaacaagac 40377012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 316 - 463
Target Start/End: Complemental strand, 7549960 - 7549813
Alignment:
Q  316 aggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttat 415  Q
    ||||||||| |||||||||||||| |||||||||||||||||  ||||| |||||||||||   ||||||||||||||||||| ||||||||| |||| |    
T  7549960 aggcactagctaaggcctttaaattgtaacttatcatgaaaagttgtgtgatcaatgcatcagaaatcgaaatatttgacttttttataaaattatttct 7549861  T
Q  416 tcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 463  Q
    ||||||  |||  |||||||||||| ||  | |||| |||||||||||    
T  7549860 tcttttgaaattcttaaagagtgtcccgaggacactcgttaacaagac 7549813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 325 - 438
Target Start/End: Complemental strand, 36393592 - 36393479
Alignment:
Q  325 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 424  Q
    ||||| ||||||||| ||||||||||||||||||| |||||||||||||||||| |||| |||||||||| ||| |||||| ||||||| |||||||  |    
T  36393592 ttaagacctttaaatggtaacttatcatgaaaatacgtgtaatcaatgcatcgaaaatcaaaatatttgatttttttataacataattttttcttttgaa 36393493  T
Q  425 atctttaaagagtg 438  Q
    ||| ||||||||||    
T  36393492 atccttaaagagtg 36393479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 317 - 438
Target Start/End: Original strand, 50974564 - 50974685
Alignment:
Q  317 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 416  Q
    |||||| |||||| ||||||||| |||| ||||||||||||||| |||||| |||||||||| ||| ||||||||||||||| |||||||||||||| ||    
T  50974564 ggcactcgttaagacctttaaatggtaatttatcatgaaaatatatgtaattaatgcatcgaaaattgaaatatttgacttttttataaaataatttttt 50974663  T
Q  417 cttttagaatctttaaagagtg 438  Q
    |||||  |||| || |||||||    
T  50974664 cttttgaaatccttcaagagtg 50974685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 331 - 463
Target Start/End: Complemental strand, 45584641 - 45584509
Alignment:
Q  331 cctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatcttt 430  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||   |||  |||||||| ||||| |||||||||||||| ||||||| ||||| ||    
T  45584641 cctttaaaaagtaacttatcatgaaaatatgtgtaatcaatacatcagaaattaaaatatttaacttttttataaaataatttcttcttttggaatcctt 45584542  T
Q  431 aaagagtgtctcggaggcactggttaacaagac 463  Q
    |||||||| | ||| |||| | |||||||||||    
T  45584541 aaagagtgccccgggggcattcgttaacaagac 45584509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 317 - 463
Target Start/End: Complemental strand, 31652738 - 31652593
Alignment:
Q  317 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 416  Q
    |||||||||||||| |||||||| ||||| ||||||||||||||||||||||| |||||||  |||  |||||||||||||| |||||||||||||| ||    
T  31652738 ggcactagttaagggctttaaatggtaacctatcatgaaaatatgtgtaatcattgcatcggaaattaaaatatttgacttttttataaaataatttctt 31652639  T
Q  417 cttttagaatctttaaagagtgtct-cggaggcactggttaacaagac 463  Q
     ||||  |||| ||||||||| ||| ||||| |||| |||||||||||    
T  31652638 -ttttgaaatccttaaagagt-tctccggagacactcgttaacaagac 31652593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 316 - 463
Target Start/End: Complemental strand, 44719298 - 44719151
Alignment:
Q  316 aggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttat 415  Q
    ||||||||||||||  |||||||| |||| ||||||||||||| |||||||||| ||||||   ||||| ||||||| ||||| |||||||||||| |||    
T  44719298 aggcactagttaagagctttaaatggtaatttatcatgaaaatgtgtgtaatcattgcatcagaaatcggaatatttaacttttttataaaataatatat 44719199  T
Q  416 tcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 463  Q
    | |||| ||||| ||||| |||||| ||| | |||| |||||||||||    
T  44719198 ttttttggaatccttaaaaagtgtcccggggacactcgttaacaagac 44719151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 346 - 438
Target Start/End: Original strand, 4039621 - 4039713
Alignment:
Q  346 ttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 438  Q
    ||||||| ||||||| |||||||||||||| |  ||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  4039621 ttatcataaaaatatatgtaatcaatgcattggaaatcgaaatatttgacttttttataaaataatttattcttttggaatccttaaagagtg 4039713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 317 - 438
Target Start/End: Complemental strand, 5851649 - 5851530
Alignment:
Q  317 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 416  Q
    |||||||| ||| |||||||||| |||||||||||||||  ||| ||||||||||||||||| ||||||||| ||||| ||| ||||||||| |||| ||    
T  5851649 ggcactagataaagcctttaaatggtaacttatcatgaa--tatttgtaatcaatgcatcgaaaatcgaaatctttgatttttttataaaattatttctt 5851552  T
Q  417 cttttagaatctttaaagagtg 438  Q
    |||||  |||| ||||||||||    
T  5851551 cttttgaaatccttaaagagtg 5851530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 333 - 439
Target Start/End: Complemental strand, 25302172 - 25302066
Alignment:
Q  333 tttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaa 432  Q
    ||||||| |||||||||||||||||||||||||||||||| || || ||||||||| ||||||||| ||||| ||| |||| || |||| ||||| ||||    
T  25302172 tttaaatggtaacttatcatgaaaatatgtgtaatcaatgtattgaaaatcgaaatctttgacttttttatacaattattttttgttttggaatccttaa 25302073  T
Q  433 agagtgt 439  Q
    |||||||    
T  25302072 agagtgt 25302066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 362 - 463
Target Start/End: Complemental strand, 25095680 - 25095579
Alignment:
Q  362 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaag 461  Q
    ||||||||||||||||| ||| ||||||||||||||| |||| ||||||||| ||||||||||||| ||||||||||||  |||| |||| | |||||||    
T  25095680 tgtaatcaatgcatcgaaaattgaaatatttgacttttttatgaaataatttcttcttttagaatccttaaagagtgtcatggagacactcgctaacaag 25095581  T
Q  462 ac 463  Q
    ||    
T  25095580 ac 25095579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 325 - 460
Target Start/End: Original strand, 34596118 - 34596250
Alignment:
Q  325 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 424  Q
    ||||| |||||||||  |||||| | |||||| |||||||||||||||||| || ||||||||||||||| ||  |||||||||||||| ||||||||||    
T  34596118 ttaagacctttaaatgataactttttatgaaattatgtgtaatcaatgcattgaaaatcgaaatatttgaatt--ttataaaataatttcttcttttaga 34596215  T
Q  425 atctttaaagagtgtctcggaggcactggttaacaa 460  Q
    ||| |||| || |||| |||||||||  ||||||||    
T  34596216 atccttaatgaatgtc-cggaggcacccgttaacaa 34596250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 352 - 440
Target Start/End: Complemental strand, 45753531 - 45753443
Alignment:
Q  352 tgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtc 440  Q
    ||||||| |||||||||||||||| || ||| |||||||||||| || || | ||||||||| ||||||||||||||||||||||||||    
T  45753531 tgaaaatttgtgtaatcaatgcattgaaaattgaaatatttgacatttttctgaaataatttcttcttttagaatctttaaagagtgtc 45753443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 317 - 411
Target Start/End: Original strand, 12148289 - 12148383
Alignment:
Q  317 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataat 411  Q
    |||||||||||| | |||||||| |||||||||||||||||||||||||| |||||||| |  |||| |||||||| ||||| | ||||||||||    
T  12148289 ggcactagttaaagtctttaaatggtaacttatcatgaaaatatgtgtaaccaatgcattggaaatcaaaatattttactttttcataaaataat 12148383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 354 - 463
Target Start/End: Complemental strand, 34445748 - 34445639
Alignment:
Q  354 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactgg 453  Q
    |||| |||| |||||||||||| |  ||||||||||||||||||| ||||||| |||||| ||||||| ||||| ||||||||||   ||| |||||| |    
T  34445748 aaaacatgtctaatcaatgcattggaaatcgaaatatttgacttttttataaattaatttcttcttttggaatccttaaagagtgctccgggggcactcg 34445649  T
Q  454 ttaacaagac 463  Q
    ||||||||||    
T  34445648 ttaacaagac 34445639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 325 - 433
Target Start/End: Original strand, 12636305 - 12636414
Alignment:
Q  325 ttaaggcctttaaatagtaacttatc-atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttag 423  Q
    ||||| |||||||||||||| || |  |||||||||||||||||||||| || |  |||||||||| |||||||| | ||||||| |||||||||||| |    
T  12636305 ttaagacctttaaatagtaatttttttatgaaaatatgtgtaatcaatgtataggaaatcgaaatacttgactttttaataaaattatttattcttttgg 12636404  T
Q  424 aatctttaaa 433  Q
    |||| |||||    
T  12636405 aatccttaaa 12636414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 325 - 438
Target Start/End: Original strand, 40203076 - 40203189
Alignment:
Q  325 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 424  Q
    |||||| |||||||| |||||||    |||||||||||||||||||||||| |  ||| ||||||||||||||| |||| ||||||||| || ||||  |    
T  40203076 ttaaggtctttaaatggtaactttgtctgaaaatatgtgtaatcaatgcattggaaattgaaatatttgacttttttatgaaataatttcttgttttgta 40203175  T
Q  425 atctttaaagagtg 438  Q
    ||| ||||||||||    
T  40203176 atccttaaagagtg 40203189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 355 - 438
Target Start/End: Original strand, 5115634 - 5115717
Alignment:
Q  355 aaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 438  Q
    |||| |||||||| ||||||| |  ||| ||||||||| ||||| |||||| ||||||||||||||||||||| ||||||||||    
T  5115634 aaatttgtgtaattaatgcattggaaattgaaatatttaacttttttataacataatttattcttttagaatccttaaagagtg 5115717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 354 - 460
Target Start/End: Original strand, 28672315 - 28672420
Alignment:
Q  354 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactgg 453  Q
    ||||||||||||||||||||||  | |||| |||||||||||||| ||| |||||||||  || |||||||||  || |||||||||||||| |||||      
T  28672315 aaaatatgtgtaatcaatgcatttaaaatcaaaatatttgacttttttaaaaaataattgtttattttagaatgctt-aagagtgtctcggatgcactca 28672413  T
Q  454 ttaacaa 460  Q
    |||||||    
T  28672414 ttaacaa 28672420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 319 - 440
Target Start/End: Original strand, 5787434 - 5787554
Alignment:
Q  319 cactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattct 418  Q
    |||||||||| | |||||||   ||||||||||  |||||||||||||| ||||||| |  ||| ||||||||| ||| | |||||||||| ||| ||||    
T  5787434 cactagttaaagtctttaaaatataacttatcaaaaaaatatgtgtaattaatgcattggaaattgaaatatttaactattttataaaatattttcttct 5787533  T
Q  419 tttagaatctttaaagagtgtc 440  Q
    ||| ||||| ||||||||||||    
T  5787534 ttt-gaatccttaaagagtgtc 5787554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 324 - 406
Target Start/End: Original strand, 42850094 - 42850176
Alignment:
Q  324 gttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaa 406  Q
    |||||| |||||||||  ||| ||||||| ||||||| | |||| |||||||||| ||||||||||||| ||||| |||||||    
T  42850094 gttaagacctttaaatgataatttatcataaaaatatatataattaatgcatcgaaaatcgaaatatttaacttttttataaa 42850176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 331 - 408
Target Start/End: Original strand, 50222611 - 50222688
Alignment:
Q  331 cctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaat 408  Q
    |||||||||||||| || | ||||||||| ||||||||||||||| || |||  |||||||||| ||| |||||||||    
T  50222611 cctttaaatagtaattttttatgaaaataagtgtaatcaatgcattgaaaattaaaatatttgatttttttataaaat 50222688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 351 - 438
Target Start/End: Original strand, 33744159 - 33744246
Alignment:
Q  351 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 438  Q
    ||||||| || |||||||||||||| || ||||||||||||||||||| | | |||||||||  || ||||| |||  ||||||||||    
T  33744159 atgaaaaaatatgtaatcaatgcattgaaaatcgaaatatttgactttttaaaaaaataattacttattttaaaatgcttaaagagtg 33744246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 317 - 412
Target Start/End: Complemental strand, 48947320 - 48947225
Alignment:
Q  317 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatt 412  Q
    |||||||||||||| |||||||| ||||||| | |||||||| |||||||||| ||||| |  ||| ||||  |||||| || ||| |||||||||    
T  48947320 ggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattgaaaactttgacatttttaaaaaataatt 48947225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 463
Target Start/End: Original strand, 13954126 - 13954271
Alignment:
Q  322 tagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctttt 421  Q
    ||||||||||||||||||   || ||||  ||||||| | |||||||| ||||| |  |||| |||| ||||| ||| ||||||| |||||| ||||| |    
T  13954126 tagttaaggcctttaaatgaaaatttattgtgaaaatgtatgtaatca-tgcattggaaatcaaaatttttgatttttttataaagtaatttcttcttct 13954224  T
Q  422 agaatctttaaagagtgt-----ctcggaggcactggttaacaagac 463  Q
    |||||| |||||||||||     |||||||||||  |||||||||||    
T  13954225 agaatccttaaagagtgttccacctcggaggcacccgttaacaagac 13954271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 433
Target Start/End: Original strand, 39241430 - 39241512
Alignment:
Q  351 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaa 433  Q
    ||||||| |||||||||||||||||||| |||  ||||||||   ||| ||||||||||| ||||| ||||| |||| |||||    
T  39241430 atgaaaacatgtgtaatcaatgcatcgaaaattaaaatatttattttttttataaaataaattatttttttaaaatccttaaa 39241512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 407
Target Start/End: Complemental strand, 48253375 - 48253319
Alignment:
Q  351 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaa 407  Q
    |||||||||||| ||||||||| || || |||||||||| |||||||| ||||||||    
T  48253375 atgaaaatatgtataatcaatgtattgaaaatcgaaatagttgacttttttataaaa 48253319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 413
Target Start/End: Complemental strand, 44442349 - 44442270
Alignment:
Q  334 ttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataattt 413  Q
    |||||||||||||| | || |||||||||||| | |||| || || ||| ||||||||||||||| ||| | ||||||||    
T  44442349 ttaaatagtaactttttataaaaatatgtgtatttaatgtattgaaaattgaaatatttgacttttttaaagaataattt 44442270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 352 - 437
Target Start/End: Original strand, 3338051 - 3338137
Alignment:
Q  352 tgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttatt-ataaaataatttattcttttagaatctttaaagagt 437  Q
    ||||||| | |||||||||||||| || ||| |||||| || | ||| || || ||||||||| |||||||||||| ||||||||||    
T  3338051 tgaaaatttatgtaatcaatgcattgaaaattgaaatacttaattttttttatgaaataatttcttcttttagaatgtttaaagagt 3338137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 385 - 439
Target Start/End: Complemental strand, 5597764 - 5597710
Alignment:
Q  385 aaatatttgactttattataaaataatttattcttttagaatctttaaagagtgt 439  Q
    |||||||| ||||| ||||| |||||||| |||||||| ||| ||||||||||||    
T  5597764 aaatatttaacttttttatagaataatttcttcttttaaaatatttaaagagtgt 5597710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 401 - 463
Target Start/End: Complemental strand, 27396164 - 27396102
Alignment:
Q  401 tataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 463  Q
    ||||||||||||| || |||||||||  ||||||| |||||||| || ||| |||||||||||    
T  27396164 tataaaataatttcttattttagaattcttaaagaatgtctcggtggtacttgttaacaagac 27396102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 318 - 416
Target Start/End: Original strand, 50328308 - 50328405
Alignment:
Q  318 gcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 416  Q
    |||||| ||||| | |||||||  ||||||||||| ||||||||| |||| || | ||| | |||| |||||||| | ||| |||||||||||||||||    
T  50328308 gcactaattaagacttttaaatgataacttatcataaaaatatgtataattaaagtatcaaaaatcaaaatattt-aattttttataaaataatttatt 50328405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 444
Target Start/End: Complemental strand, 14774184 - 14774091
Alignment:
Q  351 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcgg 444  Q
    |||||||| ||| || ||||||||| || ||||||||||||||| ||| | |  |||||||| ||| |||||||||  ||||||| | ||||||    
T  14774184 atgaaaatgtgtatattcaatgcattgaaaatcgaaatatttgattttttaaacaaataattgattattttagaatgcttaaagaatatctcgg 14774091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 435
Target Start/End: Original strand, 28171517 - 28171590
Alignment:
Q  362 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaaga 435  Q
    |||||| |||||||  | ||| ||||||||| ||||| |||||||||||||| ||||||| ||||  |||||||    
T  28171517 tgtaatgaatgcattaaaaattgaaatatttaacttttttataaaataattttttctttttgaatgcttaaaga 28171590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 398
Target Start/End: Complemental strand, 15549686 - 15549642
Alignment:
Q  354 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgacttt 398  Q
    ||||| |||||||||||||||| || ||||||||||||| |||||    
T  15549686 aaaatgtgtgtaatcaatgcattgaaaatcgaaatattttacttt 15549642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 317 - 463
Target Start/End: Original strand, 49446583 - 49446730
Alignment:
Q  317 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgac-tttattataaaataatttat 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||| ||||||||||| || |    
T  49446583 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcggaaatcgaaatatttgactttttttataaaataacttct 49446682  T
Q  416 tcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 463  Q
    |||||| ||||| |||||||||| | ||  |||||| |||||||||||    
T  49446683 tcttttggaatccttaaagagtgccccgagggcacttgttaacaagac 49446730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 324 - 463
Target Start/End: Original strand, 44646522 - 44646661
Alignment:
Q  324 gttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttag 423  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||| |||||||      
T  44646522 gttaaggcttttgaatagtaacttatcatgaaaatatgtgtaatcaatgcatcggaaatcgaaatatttgactttattataaaatagtttcttcttttga 44646621  T
Q  424 aatctttaaagagtgtctcggaggcactggttaacaagac 463  Q
    |||| ||||||| || | ||| |||||| |||||||||||    
T  44646622 aatccttaaagaatgccccgggggcactcgttaacaagac 44646661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 325 - 438
Target Start/End: Original strand, 44647879 - 44647992
Alignment:
Q  325 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 424  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||||||  ||| ||||||||||| |||||||||||||| ||| ||||||| ||    
T  44647879 ttaaggcctttgaatagtaacttatcatgaaaatatgtgtaattaatgcatcggaaattgaaatatttgattttattataaaatagtttcttcttttgga 44647978  T
Q  425 atctttaaagagtg 438  Q
    ||||||||||||||    
T  44647979 atctttaaagagtg 44647992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 318 - 462
Target Start/End: Complemental strand, 42197150 - 42197007
Alignment:
Q  318 gcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattc 417  Q
    ||||||||||| | |||||||| |||| ||||||| ||||||||||||||||||| ||||| |||| |||||||||| ||| | |||||||||||| |||    
T  42197150 gcactagttaaagtctttaaatggtaatttatcataaaaatatgtgtaatcaatgtatcgaaaatcaaaatatttgattttttaataaaataatttcttc 42197051  T
Q  418 ttttagaatctttaaagagtgtctcggaggcactggttaacaaga 462  Q
    ||||||||| ||||||||||||  || ||||||| ||||||||||    
T  42197050 ttttagaat-tttaaagagtgttccgaaggcactcgttaacaaga 42197007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 342 - 463
Target Start/End: Original strand, 6316821 - 6316942
Alignment:
Q  342 taacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtct 441  Q
    |||||||||||||||||||||||||||||||||| || |||| |||| |||| |||| ||||||||| |||| |||||||  ||||||||||||||| |     
T  6316821 taacttatcatgaaaatatgtgtaatcaatgcattgaaaatcaaaatctttgccttttttataaaattatttcttcttttgaaatctttaaagagtgccc 6316920  T
Q  442 cggaggcactggttaacaagac 463  Q
    |||||||||| |||||||||||    
T  6316921 cggaggcactcgttaacaagac 6316942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 332 - 444
Target Start/End: Original strand, 9802621 - 9802732
Alignment:
Q  332 ctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatcttta 431  Q
    ||||||| | ||||||||||| ||||||||||||||||||| ||||  |||| |||||||||||||| |||||||||||||| |||||||||||| ||||    
T  9802621 ctttaaagaataacttatcataaaaatatgtgtaatcaatgtatcggaaatcaaaatatttgacttttttataaaataattttttcttttagaat-ttta 9802719  T
Q  432 aagagtgtctcgg 444  Q
    |||||||||||||    
T  9802720 aagagtgtctcgg 9802732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 320 - 435
Target Start/End: Complemental strand, 20390138 - 20390023
Alignment:
Q  320 actagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctt 419  Q
    |||||||||||| ||||||| |||||||||||||||||  ||||| ||||||||||||| |||| |||||||||||||| ||||||||| |||| || ||    
T  20390138 actagttaaggcttttaaatggtaacttatcatgaaaagttgtgtgatcaatgcatcgaaaatcaaaatatttgacttttttataaaattatttcttgtt 20390039  T
Q  420 ttagaatctttaaaga 435  Q
    || ||||  |||||||    
T  20390038 ttggaattcttaaaga 20390023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 331 - 446
Target Start/End: Complemental strand, 42844145 - 42844030
Alignment:
Q  331 cctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatcttt 430  Q
    ||||||||  |||| |||| |||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||  | ||||  |||||||    
T  42844145 cctttaaagggtaatttattatgaaaatatgtgtaatcaatgcatcgaaaatcgaaatatttgatttttttataaaataatttcgttttttgaaatcttt 42844046  T
Q  431 aaagagtgtctcggag 446  Q
     ||||||||| |||||    
T  42844045 caagagtgtcccggag 42844030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 317 - 437
Target Start/End: Complemental strand, 41468200 - 41468080
Alignment:
Q  317 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 416  Q
    ||||||||||||||||||||||| ||||||| |||| ||||||  |||||||||||||||   ||||| ||||||| ||||| |||||| ||||||| ||    
T  41468200 ggcactagttaaggcctttaaatggtaacttttcataaaaatacatgtaatcaatgcatcagaaatcggaatatttaacttttttataacataatttctt 41468101  T
Q  417 cttttagaatctttaaagagt 437  Q
    ||||| ||||  |||||||||    
T  41468100 cttttggaattcttaaagagt 41468080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 341 - 435
Target Start/End: Complemental strand, 33982517 - 33982423
Alignment:
Q  341 gtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaaga 435  Q
    |||||||||||||||||||| ||||||||||| ||||  ||||||||||||| ||||| |||||||||||||| |||||||  |||| |||||||    
T  33982517 gtaacttatcatgaaaatatatgtaatcaatgtatcggaaatcgaaatatttaacttttttataaaataattttttcttttgaaatccttaaaga 33982423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 323 - 413
Target Start/End: Complemental strand, 44088376 - 44088286
Alignment:
Q  323 agttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataattt 413  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||||||| | | |||| |||||||||| ||| | ||||||||||||    
T  44088376 agttaaggactttaaatagtaacttatcatgaagatatgtgtaatcaatgcaccaaaaatcaaaatatttgattttttaataaaataattt 44088286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 351 - 459
Target Start/End: Complemental strand, 25196218 - 25196110
Alignment:
Q  351 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcac 450  Q
    ||||||| ||||||||| ||||  | |  |||| |||||||||||||| ||||||| |||||| ||||||||||||| ||||||||||| ||||||||||    
T  25196218 atgaaaacatgtgtaattaatgtcttggaaatcaaaatatttgacttttttataaattaattttttcttttagaatccttaaagagtgtttcggaggcac 25196119  T
Q  451 tggttaaca 459  Q
    | |||||||    
T  25196118 tcgttaaca 25196110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 328 - 421
Target Start/End: Complemental strand, 50115149 - 50115059
Alignment:
Q  328 aggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctttt 421  Q
    |||||||||||| ||||||||||||   |||||||||||||||||||| |  ||||||||| ||||||||| |||||||||||||| |||||||    
T  50115149 aggcctttaaatggtaacttatcat---aatatgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcttctttt 50115059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 362 - 463
Target Start/End: Original strand, 40480205 - 40480306
Alignment:
Q  362 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaag 461  Q
    ||||||||||| |||| |||| ||||||||||||||| |||| | ||||||| ||||||||| ||| |||||||||||| | |||||||| ||| |||||    
T  40480205 tgtaatcaatgtatcgggaattgaaatatttgacttttttatgacataatttcttcttttagcatccttaaagagtgtcccagaggcactcgtttacaag 40480304  T
Q  462 ac 463  Q
    ||    
T  40480305 ac 40480306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 351 - 438
Target Start/End: Original strand, 12103864 - 12103951
Alignment:
Q  351 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 438  Q
    ||||||||||||||||||||||  | |  ||||||| ||||||||||| |||| ||||||||||||||||||||||| ||||| ||||    
T  12103864 atgaaaatatgtgtaatcaatgttttggaaatcgaattatttgacttttttatgaaataatttattcttttagaatccttaaaaagtg 12103951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 325 - 438
Target Start/End: Original strand, 24395194 - 24395308
Alignment:
Q  325 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatg-catcgagaatcgaaatatttgac-tttattataaaataatttattctttta 422  Q
    ||||| |||||| ||||||||||   |||||||||||||||||||||| | | || |||||||||||||||| ||| ||||||| |||||| ||||||||    
T  24395194 ttaagacctttatatagtaactttgtatgaaaatatgtgtaatcaatgtcttaga-aatcgaaatatttgaccttttttataaattaatttcttctttta 24395292  T
Q  423 gaatctttaaagagtg 438  Q
    ||||| ||||||||||    
T  24395293 gaatccttaaagagtg 24395308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 332 - 422
Target Start/End: Complemental strand, 49144864 - 49144774
Alignment:
Q  332 ctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctttta 422  Q
    |||||||| |||| || |||| ||||||| ||||||||||||||||| |||| |||| ||| ||||| |||||||||||||| ||||||||    
T  49144864 ctttaaatggtaatttttcataaaaatatatgtaatcaatgcatcgaaaatcaaaatttttaacttttttataaaataatttcttctttta 49144774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 317 - 398
Target Start/End: Original strand, 38494748 - 38494829
Alignment:
Q  317 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgacttt 398  Q
    |||||||||||||| ||||| ||  ||| ||||||| ||||||||||||||||||||||||| |||||||| ||||| ||||    
T  38494748 ggcactagttaaggtctttatatgataatttatcataaaaatatgtgtaatcaatgcatcgaaaatcgaaagatttgccttt 38494829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 384 - 463
Target Start/End: Complemental strand, 28165442 - 28165362
Alignment:
Q  384 gaaatatttgactttatt-ataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 463  Q
    ||||||||||| ||| || |||||||||||| ||||||||||||||||||||||| |||| | |||||| |||||||||||    
T  28165442 gaaatatttgattttttttataaaataatttcttcttttagaatctttaaagagtatctcaggggcactcgttaacaagac 28165362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 352 - 434
Target Start/End: Original strand, 39727579 - 39727660
Alignment:
Q  352 tgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaag 434  Q
    ||||||| | |||||||||||||||   ||| ||||||||||||||| ||||| |||||||||||||||||||||| ||||||    
T  39727579 tgaaaatttatgtaatcaatgcatcagaaattgaaatatttgacttt-ttatagaataatttattcttttagaatccttaaag 39727660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 351 - 463
Target Start/End: Original strand, 50086432 - 50086543
Alignment:
Q  351 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcac 450  Q
    ||||||||||||||| ||||||||| || |||| |||||||||| ||| ||| | |||||||  || |||| |||| |||||||||| || ||| |||||    
T  50086432 atgaaaatatgtgtattcaatgcattgaaaatcaaaatatttgatttttttaaagaataattgtttattttggaatgtttaaagagtttcccgg-ggcac 50086530  T
Q  451 tggttaacaagac 463  Q
    | |||||||||||    
T  50086531 tcgttaacaagac 50086543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 362 - 435
Target Start/End: Complemental strand, 34235984 - 34235910
Alignment:
Q  362 tgtaatcaatgcatcgagaatcgaaatatttgactttatt-ataaaataatttattcttttagaatctttaaaga 435  Q
    |||||||||||||| || ||| ||||| ||||||||| || ||||||||||||||||||||| ||| ||||||||    
T  34235984 tgtaatcaatgcattgaaaattgaaatttttgactttttttataaaataatttattcttttaaaatgtttaaaga 34235910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 332 - 398
Target Start/End: Original strand, 36721591 - 36721657
Alignment:
Q  332 ctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgacttt 398  Q
    ||||||||||||| || | ||| |||| |||||||||||||||| |||||| |||||||||||||||    
T  36721591 ctttaaatagtaagtttttatggaaatttgtgtaatcaatgcattgagaattgaaatatttgacttt 36721657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 320 - 429
Target Start/End: Original strand, 49769110 - 49769219
Alignment:
Q  320 actagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctt 419  Q
    |||| ||||| ||||||||| |||||||||||| |||||||||||||||||| | ||   |||  |||| ||  ||||| ||||||||| |||| |||||    
T  49769110 actacttaagacctttaaatggtaacttatcataaaaatatgtgtaatcaattcgtcataaattaaaattttcaacttttttataaaattatttcttctt 49769209  T
Q  420 ttagaatctt 429  Q
    ||| ||||||    
T  49769210 ttaaaatctt 49769219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 362 - 421
Target Start/End: Original strand, 31871090 - 31871149
Alignment:
Q  362 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctttt 421  Q
    ||||||||||||||||  ||| ||||||||| ||||| |||||||||||||| |||||||    
T  31871090 tgtaatcaatgcatcggaaattgaaatattttacttttttataaaataatttcttctttt 31871149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 333 - 463
Target Start/End: Original strand, 52373050 - 52373181
Alignment:
Q  333 tttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttatt-ataaaataatttattcttttagaatcttta 431  Q
    |||||||||||| || |  ||||||| ||||||||  |||||| || |||   ||||||||||||| || || ||||||||| || ||| | |||| |||    
T  52373050 tttaaatagtaattttttctgaaaatttgtgtaatttatgcattgaaaattataatatttgactttttttatgaaataatttcttatttcaaaatcctta 52373149  T
Q  432 aagagtgtctcggaggcactggttaacaagac 463  Q
    ||||||||| |||||| ||| |||||||||||    
T  52373150 aagagtgtcccggaggtactcgttaacaagac 52373181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 398
Target Start/End: Original strand, 41370157 - 41370239
Alignment:
Q  316 aggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgacttt 398  Q
    |||||||  |||||| |||| |||||||| || | |||||||| |||||||||||||||| || ||| ||||||||| |||||    
T  41370157 aggcactttttaaggactttgaatagtaagtttttatgaaaatttgtgtaatcaatgcattgaaaattgaaatatttaacttt 41370239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 333 - 422
Target Start/End: Original strand, 1696194 - 1696283
Alignment:
Q  333 tttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctttta 422  Q
    ||||||||||||||| |  ||||||| | ||||||||||||||||  ||| |||||||||| |||| ||||  |||||| | ||||||||    
T  1696194 tttaaatagtaactttttttgaaaatgtatgtaatcaatgcatcggaaattgaaatatttgtcttttttatggaataatatcttctttta 1696283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 365 - 438
Target Start/End: Complemental strand, 53919936 - 53919863
Alignment:
Q  365 aatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 438  Q
    |||||||||||||  ||| ||||| ||||||||| ||||| ||||||||||||||||  |||  ||||||||||    
T  53919936 aatcaatgcatcggaaattgaaatttttgacttttttatagaataatttattcttttgaaatgcttaaagagtg 53919863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 346 - 438
Target Start/End: Complemental strand, 27346385 - 27346293
Alignment:
Q  346 ttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 438  Q
    ||||||| ||||| ||| |||| |||||| |   |||| |||| ||||||||| ||||||||||| || || |||||||||| ||||||||||    
T  27346385 ttatcataaaaatgtgtataataaatgcaccagaaatcaaaatctttgacttttttataaaataaattctttttttagaatccttaaagagtg 27346293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 440
Target Start/End: Original strand, 5387947 - 5388022
Alignment:
Q  365 aatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtc 440  Q
    ||||||||||| || ||||||||||||| | ||| |  ||||||||||| |||||||| |||||||| | ||||||    
T  5387947 aatcaatgcattgaaaatcgaaatatttaattttttattaaaataatttcttcttttaaaatctttataaagtgtc 5388022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 335 - 437
Target Start/End: Complemental strand, 51106020 - 51105918
Alignment:
Q  335 taaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaag 434  Q
    ||||||||||||  | ||||||||||| ||||||  || || || |||  |||||||||||||| ||| | |||||||  || ||||||||| |||||||    
T  51106020 taaatagtaactatttatgaaaatatgcgtaatccgtgtattgaaaattaaaatatttgacttttttaaataataattgtttattttagaatatttaaag 51105921  T
Q  435 agt 437  Q
    |||    
T  51105920 agt 51105918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 433
Target Start/End: Original strand, 27706954 - 27707003
Alignment:
Q  384 gaaatatttgactttattataaaataatttattcttttagaatctttaaa 433  Q
    ||||||||||||||| ||||||||| |||| || |||||||||| |||||    
T  27706954 gaaatatttgactttcttataaaatgatttcttattttagaatcattaaa 27707003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 440
Target Start/End: Complemental strand, 27981477 - 27981368
Alignment:
Q  332 ctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctttt-agaatcttt 430  Q
    ||||||||||||||||   ||| ||||||||||||| |||| || || ||| ||||||||| | ||| | ||||| |||||| || |||| | ||| |||    
T  27981477 ctttaaatagtaactttgtatgtaaatatgtgtaattaatgtattgaaaattgaaatatttaattttttcataaattaatttttttttttaaaaattttt 27981378  T
Q  431 aaagagtgtc 440  Q
    ||||||||||    
T  27981377 aaagagtgtc 27981368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 463
Target Start/End: Complemental strand, 44088272 - 44088211
Alignment:
Q  402 ataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 463  Q
    |||||||||||| |||||||||||| |||||| | ||   |||||||||| |||||||||||    
T  44088272 ataaaataatttcttcttttagaatttttaaaaattgctccggaggcactcgttaacaagac 44088211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 463
Target Start/End: Original strand, 52650697 - 52650826
Alignment:
Q  334 ttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaa 433  Q
    ||||||||||| || | |||||||  |||||||||| || || || ||| ||||  |||||| ||  || | |||||||| ||  ||||| || ||||||    
T  52650697 ttaaatagtaattttttatgaaaaattgtgtaatcagtgaattgaaaattgaaaattttgacatttgtaaagaataatttcttaatttagcatgtttaaa 52650796  T
Q  434 gagtgtctcggaggcactggttaacaagac 463  Q
    ||||||  |||||||||| |||||||||||    
T  52650797 gagtgttccggaggcactcgttaacaagac 52650826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 351 - 439
Target Start/End: Original strand, 11875452 - 11875539
Alignment:
Q  351 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgt 439  Q
    |||||||| ||| |||||||||||| || |||  |||||||| | |||  ||||||||||||| || ||||| || |||||||||||||    
T  11875452 atgaaaatgtgtataatcaatgcattgaaaatt-aaatatttaatttttgtataaaataatttctttttttaaaagctttaaagagtgt 11875539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 463
Target Start/End: Original strand, 23230272 - 23230372
Alignment:
Q  364 taatcaatgcatcgagaatcgaaatatttgactttatt-ataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaaga 462  Q
    |||||||||||| || ||| |||| |||| ||||| || ||  |||||||| | ||||| ||||  |||||||||||||||||| |||| ||||| ||||    
T  23230272 taatcaatgcattgaaaattgaaacatttaacttttttcatggaataatttctccttttggaatgcttaaagagtgtctcggagacactcgttaataaga 23230371  T
Q  463 c 463  Q
    |    
T  23230372 c 23230372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 351 - 463
Target Start/End: Complemental strand, 47560707 - 47560596
Alignment:
Q  351 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcac 450  Q
    ||||||||  |||||||||||| ||  | |||| ||| |||||| ||| ||| |||||||||  || |||| ||||  ||||||||||||||| || |||    
T  47560707 atgaaaatgcgtgtaatcaatgtattaaaaatcaaaacatttgattttttta-aaaataattgcttattttggaatgattaaagagtgtctcgaagacac 47560609  T
Q  451 tggttaacaagac 463  Q
    | |||||||||||    
T  47560608 tcgttaacaagac 47560596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 317 - 463
Target Start/End: Complemental strand, 34759045 - 34758899
Alignment:
Q  317 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 416  Q
    |||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||  || ||||||||||| ||||| |||||||||||||  ||    
T  34759045 ggcactagttaagggctttaaatagtaacttatcatggaaatatatgtaatcaatgcatcaggagtcgaaatatttcacttttttataaaataattactt 34758946  T
Q  417 cttttagaatctttaaagagtgtctcggaggcactggttaacaagac 463  Q
    ||||| ||||| |||||||||| | |||||||||| |||||||||||    
T  34758945 ctttttgaatccttaaagagtgccccggaggcactcgttaacaagac 34758899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 317 - 462
Target Start/End: Original strand, 54911988 - 54912133
Alignment:
Q  317 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 416  Q
    ||||||||||||||||| |||||   ||||||||||||||||||||||||||||||||||   ||| ||||||||| ||||| |||||||||| ||||||    
T  54911988 ggcactagttaaggcctataaatgacaacttatcatgaaaatatgtgtaatcaatgcatccgaaattgaaatatttaactttgttataaaatagtttatt 54912087  T
Q  417 cttttagaatctttaaagagtgtctcggaggcactggttaacaaga 462  Q
    ||||| ||||  ||||||||||  |||| | |||| ||||||||||    
T  54912088 cttttggaattcttaaagagtgcttcggggacactcgttaacaaga 54912133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 317 - 438
Target Start/End: Original strand, 18399149 - 18399271
Alignment:
Q  317 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattat-aaaataatttat 415  Q
    |||| |||||||||| ||||||| |||||||||||||||||  ||||||||||||||||||  ||||||||||||||||||| |||| ||||| |||| |    
T  18399149 ggcattagttaaggcttttaaatggtaacttatcatgaaaagttgtgtaatcaatgcatcggaaatcgaaatatttgacttttttataaaaattatttct 18399248  T
Q  416 tcttttagaatctttaaagagtg 438  Q
    |||||| ||||| ||||||||||    
T  18399249 tcttttggaatccttaaagagtg 18399271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 325 - 462
Target Start/End: Original strand, 30687077 - 30687214
Alignment:
Q  325 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 424  Q
    |||||| ||||||||  ||| ||||||||||||||||||||||||||||||| | |||| || | ||||| ||| |||||| ||||||| ||||||||||    
T  30687077 ttaaggtctttaaatgataatttatcatgaaaatatgtgtaatcaatgcatcaaaaatcaaactctttgatttttttataacataatttcttcttttaga 30687176  T
Q  425 atctttaaagagtgtctcggaggcactggttaacaaga 462  Q
    ||| ||||||||| |||| ||| |||| ||||||||||    
T  30687177 atccttaaagagtatctctgagacactcgttaacaaga 30687214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 324 - 463
Target Start/End: Complemental strand, 27968307 - 27968170
Alignment:
Q  324 gttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatc-aatgcatcgagaatcgaaatatttgactttattataaaataatttattctttta 422  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||| |||| ||||||||| |||| |||| |||| |||||||     
T  27968307 gttaaggcctttaaatggtaacttatcatgaaaatatgtgtaatcaaatgcatcgaaaatcaaaatctttgacttttttat-aaattatttcttcttttg 27968209  T
Q  423 gaatctttaaagagtgtctcggaggcactggttaacaagac 463  Q
    ||||| ||||| |||||| ||| |||||| |||||||||||    
T  27968208 gaatccttaaaaagtgtc-cgg-ggcactcgttaacaagac 27968170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 324 - 463
Target Start/End: Original strand, 52340118 - 52340257
Alignment:
Q  324 gttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttga-ctttattataaaataatttattctttta 422  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||  ||||||||| |||||  ||| ||||||||| |||| ||| |||     
T  52340118 gttaaggcctttaaatggtaacttatcataaaaatatgtgtaatcaatgcatcggaaatcgaaatctttgattttttttataaaattatttcttcctttg 52340217  T
Q  423 gaatctttaaagagtgtctcggaggcactggttaacaagac 463  Q
    ||||| |||||||||| |||||| | ||| |||||||||||    
T  52340218 gaatccttaaagagtgcctcgga-gaactcgttaacaagac 52340257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 333 - 451
Target Start/End: Complemental strand, 38388812 - 38388694
Alignment:
Q  333 tttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaa 432  Q
    |||||||||||| || | || |||||||||||||||||||||  || |||| |||||||||||||| ||||||| |||||| ||||||||||||||||||    
T  38388812 tttaaatagtaaatttttataaaaatatgtgtaatcaatgcaatgaaaatcaaaatatttgacttttttataaattaatttcttcttttagaatctttaa 38388713  T
Q  433 agagtgtctcggaggcact 451  Q
    | |||| | ||||||||||    
T  38388712 atagtgccccggaggcact 38388694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 352 - 463
Target Start/End: Complemental strand, 28434591 - 28434481
Alignment:
Q  352 tgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcact 451  Q
    ||||||| | ||||||||||||||||| |||| |||||||||||||| |||| |||||||||||||| ||| |||| |||||||||||| |||  |||||    
T  28434591 tgaaaatttatgtaatcaatgcatcgaaaatcaaaatatttgacttt-ttatgaaataatttattctcttaaaatccttaaagagtgtcccgggagcact 28434493  T
Q  452 ggttaacaagac 463  Q
     |||||||||||    
T  28434492 cgttaacaagac 28434481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 362 - 463
Target Start/End: Original strand, 779710 - 779810
Alignment:
Q  362 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaag 461  Q
    |||||| ||||||| |  |||| |||||||| ||||| | ||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||    
T  779710 tgtaatgaatgcattgcaaatcaaaatatttaactttttcataaaataatttattcttttagaatttttaaagagtgtct-ggaggcactcgttaacaag 779808  T
Q  462 ac 463  Q
    ||    
T  779809 ac 779810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 346 - 463
Target Start/End: Original strand, 38704969 - 38705086
Alignment:
Q  346 ttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcgga 445  Q
    |||||||  |||||||||||||||||||||||  |||| ||||||||||| || |||||||||||||| ||||||| ||||  |||||||||   ||||     
T  38704969 ttatcatacaaatatgtgtaatcaatgcatcggaaatcaaaatatttgacatttttataaaataattttttctttttgaattcttaaagagtacttcggg 38705068  T
Q  446 ggcactggttaacaagac 463  Q
    |||||| |||||||||||    
T  38705069 ggcactcgttaacaagac 38705086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 329 - 427
Target Start/End: Original strand, 7754772 - 7754871
Alignment:
Q  329 ggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgac-tttattataaaataatttattcttttagaatc 427  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||  ||||| ||| ||||||||| | || ||||||| |||||    
T  7754772 ggcctttaaatagtaacttatcatgaaaatatgtctaatcaatgcatcggaaatcgaaatcgttgactttttttataaaattacttcttcttttggaatc 7754871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 325 - 438
Target Start/End: Complemental strand, 4033138 - 4033026
Alignment:
Q  325 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 424  Q
    ||||| |||||||||   || ||||||||||||| |||||||||| |||||||  ||||||||| ||||| ||| |||||||||||||| || |||||||    
T  4033138 ttaagtcctttaaatgtaaatttatcatgaaaatgtgtgtaatca-tgcatcggaaatcgaaatctttgatttttttataaaataatttctttttttaga 4033040  T
Q  425 atctttaaagagtg 438  Q
    ||| ||||| ||||    
T  4033039 atccttaaaaagtg 4033026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 325 - 416
Target Start/End: Original strand, 19898100 - 19898191
Alignment:
Q  325 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 416  Q
    ||||| |||||| || |||| || | ||||||||||||||||||||||||| || ||| ||||||||||| |||  ||||||||||||||||    
T  19898100 ttaagacctttacattgtaaatttttatgaaaatatgtgtaatcaatgcattgaaaattgaaatatttgatttttatataaaataatttatt 19898191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 351 - 418
Target Start/End: Complemental strand, 55110109 - 55110042
Alignment:
Q  351 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattct 418  Q
    |||||||||| |||||||||||||| || ||||||||||||||| ||| |||||||||||||| ||||    
T  55110109 atgaaaatatatgtaatcaatgcattgaaaatcgaaatatttgatttttttataaaataattttttct 55110042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 325 - 462
Target Start/End: Original strand, 25548196 - 25548333
Alignment:
Q  325 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgac-tttattataaaataatttattcttttag 423  Q
    ||||| |||||||||  ||| || | |||||||||||||||||||||||||    ||| ||||||||| || ||| |||||||||| ||| |||||||||    
T  25548196 ttaagacctttaaatgataaatttttatgaaaatatgtgtaatcaatgcattagaaattgaaatatttaactttttttataaaatattttcttcttttag 25548295  T
Q  424 aatctttaaagagtgtctcggaggcactggttaacaaga 462  Q
    | || ||||||||||| |||| || ||| ||||||||||    
T  25548296 agtccttaaagagtgt-tcgggggtactcgttaacaaga 25548333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 360 - 434
Target Start/End: Original strand, 43749507 - 43749581
Alignment:
Q  360 tgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaag 434  Q
    ||||||||||||  || || ||| ||||||||||||||| | ||| |||||||||||||||||||||| ||||||    
T  43749507 tgtgtaatcaatatatagaaaattgaaatatttgactttttaatagaataatttattcttttagaatccttaaag 43749581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 352 - 422
Target Start/End: Original strand, 53433211 - 53433281
Alignment:
Q  352 tgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctttta 422  Q
    ||||||| | ||||||||||||||||| |||  |||||||||||||| ||||| |||||||| ||||||||    
T  53433211 tgaaaatttatgtaatcaatgcatcgaaaattaaaatatttgacttttttatagaataatttcttctttta 53433281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 380 - 435
Target Start/End: Original strand, 1680511 - 1680566
Alignment:
Q  380 aatcgaaatatttgactttattataaaataatttattcttttagaatctttaaaga 435  Q
    |||| |||||||||||||| ||||||| |||||||||||||| ||||| |||||||    
T  1680511 aatcaaaatatttgacttttttataaattaatttattctttttgaatccttaaaga 1680566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 351 - 442
Target Start/End: Complemental strand, 2831629 - 2831538
Alignment:
Q  351 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctc 442  Q
    |||||||  ||| |||||| |||||  | ||| ||||||||||||||||||| |||||||||| ||  ||| ||||| ||||||||||||||    
T  2831629 atgaaaacttgtataatcattgcatttaaaattgaaatatttgactttattaaaaaataatttcttgatttggaatccttaaagagtgtctc 2831538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 438
Target Start/End: Complemental strand, 39976804 - 39976721
Alignment:
Q  354 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 438  Q
    |||||| |||||||||||| || || ||| |||| |||||||||| ||| ||||||||| ||| ||||||||| || ||||||||    
T  39976804 aaaatacgtgtaatcaatgtattgaaaatagaaacatttgactttttta-aaaataattgattattttagaatgttcaaagagtg 39976721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 418
Target Start/End: Original strand, 54955783 - 54955859
Alignment:
Q  343 aacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttat-tataaaataatttattct 418  Q
    ||||| |||||||||||| ||||||  ||||||| | |||| |||||||||| ||| | ||||||||||||||||||    
T  54955783 aacttttcatgaaaatatatgtaatttatgcatcaaaaatcaaaatatttgattttttctataaaataatttattct 54955859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 385 - 439
Target Start/End: Complemental strand, 11404754 - 11404700
Alignment:
Q  385 aaatatttgactttattataaaataatttattcttttagaatctttaaagagtgt 439  Q
    |||||||| ||||| ||||||||||||||||| ||||  |||||| |||||||||    
T  11404754 aaatatttaacttttttataaaataatttatttttttttaatcttaaaagagtgt 11404700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 362 - 412
Target Start/End: Complemental strand, 40546398 - 40546348
Alignment:
Q  362 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatt 412  Q
    |||||||||||||| |  ||||||||||||||||||| ||| |||||||||    
T  40546398 tgtaatcaatgcattggaaatcgaaatatttgacttttttaaaaaataatt 40546348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 192
Target Start/End: Complemental strand, 9213572 - 9213512
Alignment:
Q  131 agattcattaacttttgttgatttaaatgtctttttataaaaaggatcggagggagtatttt 192  Q
    |||| ||| |||||||||||| | ||||||||||| ||||| |||| |||||||||||||||    
T  9213572 agatacatcaacttttgttgactaaaatgtctttt-ataaataggaccggagggagtatttt 9213512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 463
Target Start/End: Original strand, 29497248 - 29497285
Alignment:
Q  426 tctttaaagagtgtctcggaggcactggttaacaagac 463  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  29497248 tctttaaagaatgtctcggaggcactcgttaacaagac 29497285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 463
Target Start/End: Complemental strand, 29612035 - 29611990
Alignment:
Q  418 ttttagaatctttaaagagtgtctcggaggcactggttaacaagac 463  Q
    ||||||||| ||||||||||||| ||| |||||| |||||||||||    
T  29612035 ttttagaatgtttaaagagtgtcccgggggcactcgttaacaagac 29611990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 351 - 407
Target Start/End: Original strand, 21490626 - 21490682
Alignment:
Q  351 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaa 407  Q
    |||||||||||||| ||||||| || || ||| ||||||||||||||| ||| ||||    
T  21490626 atgaaaatatgtgtcatcaatgaattgaaaattgaaatatttgacttttttacaaaa 21490682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 426
Target Start/End: Original strand, 30463992 - 30464056
Alignment:
Q  362 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaat 426  Q
    ||||||||||||||  | ||| ||||| ||||||||| ||||| |||||||| ||||||| ||||    
T  30463992 tgtaatcaatgcattaaaaattgaaatgtttgacttttttatagaataatttcttcttttggaat 30464056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 380 - 420
Target Start/End: Original strand, 37775371 - 37775411
Alignment:
Q  380 aatcgaaatatttgactttattataaaataatttattcttt 420  Q
    ||||||||||||| ||||| |||||||||||||| ||||||    
T  37775371 aatcgaaatatttaacttttttataaaataatttcttcttt 37775411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 320 - 463
Target Start/End: Complemental strand, 8247180 - 8247037
Alignment:
Q  320 actagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctt 419  Q
    ||||||||||| |||||||| |||||||||||||||||  ||| ||||||||||||||  ||||||||||||||||||| ||||||||| |||| |||||    
T  8247180 actagttaaggtctttaaatggtaacttatcatgaaaagttgtataatcaatgcatcggaaatcgaaatatttgacttttttataaaattatttcttctt 8247081  T
Q  420 ttagaatctttaaagagtgtctcggaggcactggttaacaagac 463  Q
    || ||||| |||||||||||| ||| |||||| |||||||||||    
T  8247080 ttggaatccttaaagagtgtcacgggggcactcgttaacaagac 8247037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 318 - 463
Target Start/End: Complemental strand, 3263862 - 3263717
Alignment:
Q  318 gcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattc 417  Q
    ||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||  ||||||||| ||||||||| ||||||||| |||| |||    
T  3263862 gcactagttaaggtctttaaatggtaacttatcattaaaatatgtgtaatcaatgcatcggaaatcgaaatctttgacttttttataaaatgatttcttc 3263763  T
Q  418 ttttagaatctttaaagagtgtctcggaggcactggttaacaagac 463  Q
    ||||  |||  |||||||||| | |||| ||||| |||||||||||    
T  3263762 ttttgaaattcttaaagagtgccccggaagcactcgttaacaagac 3263717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 317 - 460
Target Start/End: Complemental strand, 19692840 - 19692696
Alignment:
Q  317 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgac-tttattataaaataatttat 415  Q
    |||||| |||||||||||||||| |||||||||||| ||| |||||||||||||||||| || |||||||||||||||| ||| ||||||| |||||| |    
T  19692840 ggcactggttaaggcctttaaattgtaacttatcatcaaattatgtgtaatcaatgcattgaaaatcgaaatatttgactttttttataaattaatttct 19692741  T
Q  416 tcttttagaatctttaaagagtgtctcggaggcactggttaacaa 460  Q
    ||||||  ||||||||||||||| | ||| | |||| ||||||||    
T  19692740 tcttttgaaatctttaaagagtgccccggggacactcgttaacaa 19692696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 324 - 435
Target Start/End: Original strand, 5356295 - 5356406
Alignment:
Q  324 gttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttag 423  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||| |||||| || |||| |    
T  5356295 gttaaggtctttaaatggtaacttatcatgaaaatatgtgtaatcaatgcatcgaaaatcgaaatatttgacgtttttataaattaatttcttattttgg 5356394  T
Q  424 aatctttaaaga 435  Q
     ||| |||||||    
T  5356395 tatccttaaaga 5356406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 317 - 437
Target Start/End: Complemental strand, 35395304 - 35395184
Alignment:
Q  317 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 416  Q
    |||||| |||||  ||||| ||| | |||||||||||||||||||||||||||||||||||| |||  |||||||||||||| |||||||||| ||| ||    
T  35395304 ggcactcgttaacaccttttaatggcaacttatcatgaaaatatgtgtaatcaatgcatcgaaaattaaaatatttgacttttttataaaatagtttctt 35395205  T
Q  417 cttttagaatctttaaagagt 437  Q
    ||||| ||||| |||||||||    
T  35395204 cttttggaatccttaaagagt 35395184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 318 - 463
Target Start/End: Complemental strand, 10051845 - 10051700
Alignment:
Q  318 gcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattc 417  Q
    |||||||||||| ||||||||| ||||||||| |||||||  ||| ||||||||||||||  |||  |||||||||||||| ||||||||| |||| |||    
T  10051845 gcactagttaagacctttaaatggtaacttattatgaaaagttgtataatcaatgcatcggaaatataaatatttgacttttttataaaattatttcttc 10051746  T
Q  418 ttttagaatctttaaagagtgtctcggaggcactggttaacaagac 463  Q
    ||||| |||| |||||||||| ||  | | |||| |||||||||||    
T  10051745 ttttaaaatccttaaagagtgccttagggacactcgttaacaagac 10051700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 322 - 463
Target Start/End: Complemental strand, 28793446 - 28793305
Alignment:
Q  322 tagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctttt 421  Q
    |||||||||  ||||||| |||| ||||||| ||||||| |||||| |||||||||  ||||||||||||||||||| ||||||||| |||| |||||||    
T  28793446 tagttaaggtatttaaatggtaaattatcataaaaatatatgtaattaatgcatcggaaatcgaaatatttgacttttttataaaatcatttcttctttt 28793347  T
Q  422 agaatctttaaagagtgtctcggaggcactggttaacaagac 463  Q
     ||||| |||||||| |   |||| ||||| |||||||||||    
T  28793346 ggaatccttaaagagcgcaccggaagcactcgttaacaagac 28793305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 324 - 461
Target Start/End: Original strand, 1354345 - 1354481
Alignment:
Q  324 gttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttag 423  Q
    |||||||||||||||  |||| ||||||||||||||| | ||||||||  ||    ||||||||||||| ||||| |||||||||||||| || ||||||    
T  1354345 gttaaggcctttaaaaggtaaattatcatgaaaatatatataatcaatatattagaaatcgaaatatttaacttttttataaaataatttctttttttag 1354444  T
Q  424 aatctttaaagagtgtctcggaggcactggttaacaag 461  Q
    ||| | | |||||||||||||||||||| |||||||||    
T  1354445 aat-tcttaagagtgtctcggaggcacttgttaacaag 1354481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 317 - 435
Target Start/End: Complemental strand, 22473551 - 22473432
Alignment:
Q  317 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttga-ctttattataaaataatttat 415  Q
    |||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||   |||  ||||||||||  ||| |||||||||||||| |    
T  22473551 ggcactagttaagggctttaaatggtaacttatcgtgaaaatatgtgtaatcaatgcatcagaaattaaaatatttgattttttttataaaataatttct 22473452  T
Q  416 tcttttagaatctttaaaga 435  Q
    ||||||  |||| |||||||    
T  22473451 tcttttgaaatccttaaaga 22473432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 342 - 438
Target Start/End: Complemental strand, 21582463 - 21582367
Alignment:
Q  342 taacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 438  Q
    ||||||||||||||||| ||||| |||| || |||   ||||||||||||||||| | |||||||||||||||||||||| ||||| ||||| ||||    
T  21582463 taacttatcatgaaaatgtgtgtgatcattgtatcagaaatcgaaatatttgactattttataaaataatttattcttttggaatccttaaaaagtg 21582367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 354 - 456
Target Start/End: Complemental strand, 14042542 - 14042440
Alignment:
Q  354 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactgg 453  Q
    ||||| ||| |||||||||||| |  |||| |||||||||||||| ||| | ||||||||||| |||||||||||||||||||| || ||||| |||| |    
T  14042542 aaaatttgtataatcaatgcattggaaatcaaaatatttgacttttttaaataataatttattattttagaatctttaaagagtatcccggagacactcg 14042443  T
Q  454 tta 456  Q
    |||    
T  14042442 tta 14042440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 340 - 437
Target Start/End: Complemental strand, 31889709 - 31889611
Alignment:
Q  340 agtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgac-tttattataaaataatttattcttttagaatctttaaagagt 437  Q
    |||||||| | |||||||||||||||||||||||||    ||| ||||||||| || ||| ||||||| |||||| ||||||||||||| |||||||||    
T  31889709 agtaactttttatgaaaatatgtgtaatcaatgcattagaaattgaaatattttactttttttataaattaatttcttcttttagaatcgttaaagagt 31889611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 380 - 463
Target Start/End: Original strand, 4725897 - 4725979
Alignment:
Q  380 aatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 463  Q
    ||||||||| ||||||||| ||||||||||||||||||||||  |||| ||||| ||||| |||| | |||| |||||||||||    
T  4725897 aatcgaaatctttgacttt-ttataaaataatttattcttttgaaatccttaaacagtgtttcggggacactcgttaacaagac 4725979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 322 - 408
Target Start/End: Original strand, 142350 - 142436
Alignment:
Q  322 tagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaat 408  Q
    |||||||| ||||||||  |||||||||||| ||| ||||||||||||||| |||   ||| ||||||||||| ||| |||||||||    
T  142350 tagttaagccctttaaaatgtaacttatcataaaattatgtgtaatcaatgtatcagaaattgaaatatttgatttttttataaaat 142436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 386 - 440
Target Start/End: Complemental strand, 22871967 - 22871913
Alignment:
Q  386 aatatttgactttattataaaataatttattcttttagaatctttaaagagtgtc 440  Q
    ||||||||||||| |||||||||| ||| ||||||||||||| ||||||||||||    
T  22871967 aatatttgacttttttataaaatattttcttcttttagaatccttaaagagtgtc 22871913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 354 - 439
Target Start/End: Complemental strand, 3758279 - 3758194
Alignment:
Q  354 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgt 439  Q
    |||| |||| || ||||||||| || ||||||||||||||||||| ||| | ||||||| ||| ||||| ||| ||||||||||||    
T  3758279 aaaaaatgtatattcaatgcattgaaaatcgaaatatttgacttttttaaagaataattgattattttaaaatgtttaaagagtgt 3758194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 426
Target Start/End: Complemental strand, 26663714 - 26663642
Alignment:
Q  354 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaat 426  Q
    |||| ||||||||||||| ||| |  ||||||||||||||||||| ||| |||||||||| || |||||||||    
T  26663714 aaaaaatgtgtaatcaatacattggaaatcgaaatatttgacttttttaaaaaataatttcttattttagaat 26663642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 426
Target Start/End: Complemental strand, 26935309 - 26935237
Alignment:
Q  354 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaat 426  Q
    |||| ||||||||||||| ||| |  ||||||||||||||||||| ||| |||||||||| || |||||||||    
T  26935309 aaaaaatgtgtaatcaatacattggaaatcgaaatatttgacttttttaaaaaataatttcttattttagaat 26935237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 325 - 460
Target Start/End: Original strand, 14474998 - 14475133
Alignment:
Q  325 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 424  Q
    ||||| |||| |||||||||||| |  ||||||| | ||||||||| |||||   ||| |||||||||||| || ||||| |||||||| |||||||| |    
T  14474998 ttaagaccttcaaatagtaactttttttgaaaatttatgtaatcaaagcatctgaaattgaaatatttgacatttttatagaataatttcttcttttaaa 14475097  T
Q  425 atctttaaagagtgtctcggaggcactggttaacaa 460  Q
    ||  || ||||| | | |||| ||||| ||||||||    
T  14475098 atgcttgaagagagccccggaagcacttgttaacaa 14475133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 463
Target Start/End: Original strand, 27650866 - 27650944
Alignment:
Q  385 aaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 463  Q
    |||||||| ||||| ||||| |||||||| || |||| |||| ||||||||||||  |||||| ||| |||||||||||    
T  27650866 aaatatttaacttttttatataataatttctttttttggaatgtttaaagagtgttccggaggtactcgttaacaagac 27650944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 437
Target Start/End: Complemental strand, 37976497 - 37976444
Alignment:
Q  384 gaaatatttgactttattataaaataatttattcttttagaatctttaaagagt 437  Q
    ||||||||||| ||| |||| ||||||||| |||||||||||| ||||||||||    
T  37976497 gaaatatttgatttttttatgaaataatttcttcttttagaatgtttaaagagt 37976444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 385 - 439
Target Start/End: Complemental strand, 12933381 - 12933327
Alignment:
Q  385 aaatatttgactttattataaaataatttattcttttagaatctttaaagagtgt 439  Q
    |||||||||||||| ||||||||||||||||| ||||  |||| || ||||||||    
T  12933381 aaatatttgactttcttataaaataatttattattttgaaatcgttgaagagtgt 12933327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 380 - 426
Target Start/End: Original strand, 24241210 - 24241256
Alignment:
Q  380 aatcgaaatatttgactttattataaaataatttattcttttagaat 426  Q
    ||||||||||||||||||| |  ||||||||||| ||||||||||||    
T  24241210 aatcgaaatatttgactttttattaaaataattttttcttttagaat 24241256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 411
Target Start/End: Original strand, 24241039 - 24241096
Alignment:
Q  354 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataat 411  Q
    ||||||||| ||||||||| ||  | ||| ||||||||||||||| ||||||||||||    
T  24241039 aaaatatgtataatcaatgtattaaaaattgaaatatttgacttttttataaaataat 24241096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 376
Target Start/End: Complemental strand, 43145943 - 43145883
Alignment:
Q  316 aggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatc 376  Q
    |||||||| ||||| |||||||||||||| || |  ||||||| | |||||||||||||||    
T  43145943 aggcactatttaagacctttaaatagtaattttttttgaaaatttatgtaatcaatgcatc 43145883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 3e-37; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 316 - 463
Target Start/End: Complemental strand, 8789973 - 8789826
Alignment:
Q  316 aggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttat 415  Q
    ||||||| ||||||| |||||||  |||||||| |||||||||||||||||||||||||||   |||| |||||||| ||||| |||||||||||||| |    
T  8789973 aggcactggttaaggtctttaaagggtaacttaacatgaaaatatgtgtaatcaatgcatcagaaatcaaaatatttaacttttttataaaataatttct 8789874  T
Q  416 tcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 463  Q
    ||||||||||||||||||||||||| || | | ||| |||||||||||    
T  8789873 tcttttagaatctttaaagagtgtcccgaaagtactcgttaacaagac 8789826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 318 - 463
Target Start/End: Original strand, 44941072 - 44941216
Alignment:
Q  318 gcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattc 417  Q
    |||||||||||||||||||||| |||| |||||| |||||||| ||||||||||||||||  ||||||||| ||| ||||| |||||| ||| ||| |||    
T  44941072 gcactagttaaggcctttaaatggtaatttatcaggaaaatatatgtaatcaatgcatcggaaatcgaaatctttaacttttttataacatactttcttc 44941171  T
Q  418 ttttagaatctttaaagagtgtctcggaggcactggttaacaagac 463  Q
    |||||||||| |||||||||||||| | |||||| |||||||||||    
T  44941172 ttttagaatccttaaagagtgtctcag-ggcactcgttaacaagac 44941216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 320 - 463
Target Start/End: Original strand, 20682990 - 20683133
Alignment:
Q  320 actagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctt 419  Q
    ||||||||| |  |||| || |||||||||||| ||||||||||||||||||||||||  ||||||||||||||| ||| |||||||||  ||| |||||    
T  20682990 actagttaaagtttttatatggtaacttatcataaaaatatgtgtaatcaatgcatcggaaatcgaaatatttgatttttttataaaatcttttcttctt 20683089  T
Q  420 ttagaatctttaaagagtgtctcggaggcactggttaacaagac 463  Q
    || ||||| |||||||||||| ||| |||||| |||||||||||    
T  20683090 ttggaatccttaaagagtgtcccgggggcactcgttaacaagac 20683133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 324 - 438
Target Start/End: Original strand, 8773670 - 8773784
Alignment:
Q  324 gttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttag 423  Q
    ||||||| |||||||  |||||||| ||||||||||| |||||||||||||||   |||| |||||||||||||| |||||||||||||| |||||||||    
T  8773670 gttaaggtctttaaagggtaacttaacatgaaaatatatgtaatcaatgcatcagaaatcaaaatatttgacttttttataaaataatttcttcttttag 8773769  T
Q  424 aatctttaaagagtg 438  Q
    |||||||||||||||    
T  8773770 aatctttaaagagtg 8773784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 342 - 440
Target Start/End: Original strand, 4238341 - 4238438
Alignment:
Q  342 taacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtc 440  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||| ||||||| ||||| ||||||||||||    
T  4238341 taacttat-atgaaaatatgtgtaatcaatgcatcgaaaatcgaaatatttgatttttttataaaataatttcttctttttgaatccttaaagagtgtc 4238438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 317 - 440
Target Start/End: Original strand, 18053008 - 18053130
Alignment:
Q  317 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 416  Q
    |||| |||||||||||||||||  |||| ||||||||||| ||||| ||||||||||||||  |||| |||||||||||||| |||||||||||||| ||    
T  18053008 ggcattagttaaggcctttaaag-gtaatttatcatgaaagtatgtataatcaatgcatcggaaatcaaaatatttgacttttttataaaataatttctt 18053106  T
Q  417 cttttagaatctttaaagagtgtc 440  Q
    |||||  |||| ||||||||||||    
T  18053107 cttttgaaatccttaaagagtgtc 18053130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 325 - 438
Target Start/End: Original strand, 42945012 - 42945125
Alignment:
Q  325 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 424  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||  |  ||||||||||||||| ||| | |||||||||| | |||||||| |    
T  42945012 ttaaggcctttaaatagtaaattatcataaaaatatgtgtaatcaatgcactggaaatcgaaatatttgagtttttaataaaataatgttttcttttaaa 42945111  T
Q  425 atctttaaagagtg 438  Q
    ||| ||||| ||||    
T  42945112 atccttaaaaagtg 42945125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 352 - 463
Target Start/End: Original strand, 6761751 - 6761862
Alignment:
Q  352 tgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcact 451  Q
    ||||||| | |||||||||||||| |  ||| ||||||||||||||| ||||| ||| |||||||||||| ||||  |||||||||| |||||| |||||    
T  6761751 tgaaaatttatgtaatcaatgcattggaaattgaaatatttgacttttttatagaatgatttattcttttggaatgcttaaagagtgcctcggaagcact 6761850  T
Q  452 ggttaacaagac 463  Q
     |||||||||||    
T  6761851 tgttaacaagac 6761862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 325 - 435
Target Start/End: Original strand, 2393038 - 2393148
Alignment:
Q  325 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 424  Q
    ||||| |||||| ||||||||||   ||||||| ||||| ||||||||  | ||||||| |||||||||||||| ||||||| |||||| ||||||||||    
T  2393038 ttaagacctttatatagtaactttgtatgaaaacatgtgaaatcaatgtcttgagaatcaaaatatttgacttttttataaattaatttcttcttttaga 2393137  T
Q  425 atctttaaaga 435  Q
    ||| |||||||    
T  2393138 atccttaaaga 2393148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 324 - 438
Target Start/End: Original strand, 34546265 - 34546379
Alignment:
Q  324 gttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttag 423  Q
    |||||| || ||||||  ||||||||||||||||| |||||||||||||||||   ||||||| ||||||||||| ||||||| |||||| ||| ||| |    
T  34546265 gttaagaccattaaatgataacttatcatgaaaatgtgtgtaatcaatgcatcagaaatcgaagtatttgacttttttataaattaatttcttcatttgg 34546364  T
Q  424 aatctttaaagagtg 438  Q
    |||| | ||||||||    
T  34546365 aatcctcaaagagtg 34546379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 325 - 451
Target Start/End: Complemental strand, 42967066 - 42966938
Alignment:
Q  325 ttaaggcctttaaatagtaa-cttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgac-tttattataaaataatttattctttta 422  Q
    ||||| ||||||||||||||  || |  ||||||| | |||||||||||||||| |||| ||||||||| || ||| |||| ||||||||| ||||||||    
T  42967066 ttaagacctttaaatagtaatttttttttgaaaatttatgtaatcaatgcatcgggaattgaaatatttaactttttttatgaaataatttcttctttta 42966967  T
Q  423 gaatctttaaagagtgtctcggaggcact 451  Q
    | ||  |||||||||||||||||||||||    
T  42966966 gtattcttaaagagtgtctcggaggcact 42966938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 353 - 425
Target Start/End: Complemental strand, 1070639 - 1070568
Alignment:
Q  353 gaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaa 425  Q
    ||||||||||||||||||| ||| || |||| |||||||| |||||||||||||||||| |||||||||||||    
T  1070639 gaaaatatgtgtaatcaat-cattgaaaatcaaaatattttactttattataaaataatatattcttttagaa 1070568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 318 - 463
Target Start/End: Original strand, 5961954 - 5962101
Alignment:
Q  318 gcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttatt-ataaaataattta-t 415  Q
    |||||| ||||| ||||||||||||||||  |  ||||||| | |||||||||||||| |  ||| ||||||||| | ||| || ||  |||| |||  |    
T  5961954 gcactatttaagacctttaaatagtaactgtttttgaaaatttatgtaatcaatgcattggaaattgaaatatttaattttttttatggaatatttttct 5962053  T
Q  416 tcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 463  Q
    |||||||||||  ||||||||||||||||||||||| |||||||||||    
T  5962054 tcttttagaatgcttaaagagtgtctcggaggcactcgttaacaagac 5962101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 82 - 165
Target Start/End: Complemental strand, 10069312 - 10069229
Alignment:
Q  82 aaatatttaggttaacaaacgttaatggatctagtccaattatttaactagattcattaacttttgttgatttaaatgtctttt 165  Q
    |||||||||||| |||||| ||||||| ||||||||||||| |||||| |||| ||| ||||||| |||| | |||||||||||    
T  10069312 aaatatttaggtcaacaaaagttaatgtatctagtccaattttttaaccagatacataaacttttattgactcaaatgtctttt 10069229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 349 - 463
Target Start/End: Complemental strand, 3882700 - 3882586
Alignment:
Q  349 tcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggc 448  Q
    |||||||||| |||||||||||||||| || || ||||||||||||| || ||| | |||||||  || |||||||||  |||||||||| | ||  |||    
T  3882700 tcatgaaaatgtgtgtaatcaatgcattgaaaaccgaaatatttgacctttttaaagaataattgcttattttagaatgcttaaagagtgccccgagggc 3882601  T
Q  449 actggttaacaagac 463  Q
    ||| |||||||||||    
T  3882600 actcgttaacaagac 3882586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 368 - 460
Target Start/End: Original strand, 433551 - 433643
Alignment:
Q  368 caatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgt-ctcggaggcactggttaacaa 460  Q
    ||||||||| | |||| |||||||| ||||| ||||||| |||||||||||||| ||||| ||||||||||| ||||| |||||| ||||||||    
T  433551 caatgcatcaaaaatcaaaatatttaacttttttataaattaatttattcttttggaatccttaaagagtgtcctcgg-ggcactcgttaacaa 433643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 439
Target Start/End: Original strand, 8898861 - 8898913
Alignment:
Q  387 atatttgactttattataaaataatttattcttttagaatctttaaagagtgt 439  Q
    ||||||||||||||||||||||||||| || |||||||||| |||||| ||||    
T  8898861 atatttgactttattataaaataatttcttattttagaatcattaaagggtgt 8898913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 463
Target Start/End: Complemental strand, 18227204 - 18227092
Alignment:
Q  351 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcac 450  Q
    |||||||| | | |||||||||||| || |||||||||||||||||||  |  | |||||||  || ||||| ||| ||||||||||||  ||||| |||    
T  18227204 atgaaaatgtatttaatcaatgcattgaaaatcgaaatatttgacttttatgaagaataattacttattttataatgtttaaagagtgttccggagacac 18227105  T
Q  451 tggttaacaagac 463  Q
    | |||||||||||    
T  18227104 tcgttaacaagac 18227092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 354 - 437
Target Start/End: Original strand, 2825983 - 2826066
Alignment:
Q  354 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagt 437  Q
    ||||| |||||||||||||||| |  ||||||||||||| ||||| ||| |||||||||| || |||||| ||  |||||||||    
T  2825983 aaaatgtgtgtaatcaatgcattggaaatcgaaatattttacttttttaaaaaataatttcttattttagtatgcttaaagagt 2826066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 451
Target Start/End: Original strand, 13442636 - 13442703
Alignment:
Q  384 gaaatatttgactttatt-ataaaataatttattcttttagaatctttaaagagtgtctcggaggcact 451  Q
    ||||||||| ||||| || |||||||||||||||||||| |||||||||||||||   |||||||||||    
T  13442636 gaaatatttaactttttttataaaataatttattctttt-gaatctttaaagagtacttcggaggcact 13442703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 435
Target Start/End: Complemental strand, 35228816 - 35228732
Alignment:
Q  351 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaaga 435  Q
    ||||||||||||||||| |||||||    |||||||||||||||  || ||| |||||||||| |||||||  |||| |||||||    
T  35228816 atgaaaatatgtgtaataaatgcattagaaatcgaaatatttgatctttttagaaaataatttcttcttttgaaatccttaaaga 35228732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 380 - 438
Target Start/End: Original strand, 3199541 - 3199599
Alignment:
Q  380 aatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 438  Q
    |||| |||||||||| ||| |||||||||||||| || |||||||||  ||||||||||    
T  3199541 aatcaaaatatttgaattttttataaaataatttcttattttagaattattaaagagtg 3199599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 333 - 440
Target Start/End: Complemental strand, 7271880 - 7271769
Alignment:
Q  333 tttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgac----tttattataaaataatttattcttttagaatct 428  Q
    |||||||  |||||| | |||||||||| |||||||||||||| |  |||  |||||||||||    ||| |||||| ||| ||| || ||||||||||     
T  7271880 tttaaatgataactttttatgaaaatatatgtaatcaatgcattggaaataaaaatatttgacttttttttttataagatagtttctttttttagaatcc 7271781  T
Q  429 ttaaagagtgtc 440  Q
    ||||||||||||    
T  7271780 ttaaagagtgtc 7271769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 325 - 462
Target Start/End: Original strand, 14102297 - 14102435
Alignment:
Q  325 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgac-tttattataaaataatttattcttttag 423  Q
    |||||| || ||| ||||||||  | |||||||  ||||||||||||| || |  ||||||||||||| || ||| || | ||||||||| || |||| |    
T  14102297 ttaaggactataagtagtaactatttatgaaaaagtgtgtaatcaatgtattggaaatcgaaatatttaacttttttttttaaataatttcttattttgg 14102396  T
Q  424 aatctttaaagagtgtctcggaggcactggttaacaaga 462  Q
     || |||||||||||   |||||||||| ||||||||||    
T  14102397 catgtttaaagagtgctccggaggcactcgttaacaaga 14102435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 439
Target Start/End: Original strand, 31448315 - 31448400
Alignment:
Q  354 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgt 439  Q
    |||||||| ||||| |||| ||||  |||| |||| ||| | ||| |||||||||||||| ||||||   ||||||||||||||||    
T  31448315 aaaatatgagtaattaatgtatcggaaatcaaaatttttaaattttttataaaataatttcttctttagaaatctttaaagagtgt 31448400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 433
Target Start/End: Complemental strand, 45212110 - 45212057
Alignment:
Q  380 aatcgaaatatttgactttattataaaataatttattcttttagaatctttaaa 433  Q
    |||| |||||||||| ||| ||||||||||||||||  |||||||||| |||||    
T  45212110 aatcaaaatatttgatttttttataaaataatttatctttttagaatccttaaa 45212057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 351 - 439
Target Start/End: Original strand, 33275918 - 33276005
Alignment:
Q  351 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgt 439  Q
    |||||||| |||||| || ||| || || ||| ||||||||| ||||| ||| |||||||||| || |||||||||  |||||||||||    
T  33275918 atgaaaatgtgtgta-tctatgtattgaaaattgaaatatttaacttttttaaaaaataatttcttgttttagaatgcttaaagagtgt 33276005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 317 - 437
Target Start/End: Original strand, 30412910 - 30413030
Alignment:
Q  317 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 416  Q
    |||||| ||||||||||||||||||||| |||||| |||||||||| |||||||||||||| |||||||||||||||||||||| |||||||| ||| ||    
T  30412910 ggcactggttaaggcctttaaatagtaatttatcacgaaaatatgtataatcaatgcatcgggaatcgaaatatttgactttatcataaaatagtttctt 30413009  T
Q  417 cttttagaatctttaaagagt 437  Q
    |||||  |||| |||||||||    
T  30413010 cttttgaaatccttaaagagt 30413030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 317 - 463
Target Start/End: Complemental strand, 8170147 - 8170001
Alignment:
Q  317 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 416  Q
    |||||||||||||| ||||||| |||||||||||||||| |||||| ||||||||| ||||  |||| |||||||||||||| |||||||||||||| ||    
T  8170147 ggcactagttaaggtctttaaaaagtaacttatcatgaacatatgtataatcaatgtatcggaaatcaaaatatttgacttttttataaaataatttctt 8170048  T
Q  417 cttttagaatctttaaagagtgtctcggaggcactggttaacaagac 463  Q
    ||||| ||||| |||||||||||  |||  | ||| |||||||||||    
T  8170047 cttttggaatccttaaagagtgttccgggagtacttgttaacaagac 8170001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 317 - 427
Target Start/End: Complemental strand, 48137899 - 48137789
Alignment:
Q  317 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 416  Q
    |||||||||||| || |||||||||||| ||||||| ||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||| ||    
T  48137899 ggcactagttaatgcttttaaatagtaatttatcataaaaatatgtgtaatcaatgcatcgaaaatcaaaatatttgacttttttataaaataatttctt 48137800  T
Q  417 cttttagaatc 427  Q
    ||||| |||||    
T  48137799 cttttggaatc 48137789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 344 - 438
Target Start/End: Complemental strand, 42493798 - 42493703
Alignment:
Q  344 acttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattat-aaaataatttattcttttagaatctttaaagagtg 438  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||| |||||||||| ||||||| ||||| ||||||||||    
T  42493798 acttatcatgaaaatatgtgtaatcaatgcatcgaaaatcaaaatatttgacttttttatcaaaataatttcttcttttggaatccttaaagagtg 42493703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 332 - 463
Target Start/End: Complemental strand, 47507711 - 47507580
Alignment:
Q  332 ctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatcttta 431  Q
    |||||||| ||||||| ||||||||| ||||||||||||| |||||  ||| ||||| ||||| ||| ||||||||| |||| ||||||||||||| |||    
T  47507711 ctttaaatggtaacttctcatgaaaaaatgtgtaatcaatacatcggaaattgaaatctttgatttttttataaaattatttcttcttttagaatcctta 47507612  T
Q  432 aagagtgtctcggaggcactggttaacaagac 463  Q
    ||||||| | ||||| |||| |||||||||||    
T  47507611 aagagtgccccggagacactcgttaacaagac 47507580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 321 - 459
Target Start/End: Complemental strand, 38452283 - 38452146
Alignment:
Q  321 ctagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttt 420  Q
    ||||||||||||||||||   ||| |||| |||||||||||||||| ||||||||||  ||| ||||||||||||||| |||||||||||||| ||||||    
T  38452283 ctagttaaggcctttaaaagataatttattatgaaaatatgtgtaaccaatgcatcggaaattgaaatatttgacttttttataaaataatttcttcttt 38452184  T
Q  421 tagaatctttaaagagtgtctcggaggcactggttaaca 459  Q
    |  |||| ||||||| ||| |||| |||||| |||||||    
T  38452183 ttaaatccttaaagaatgt-tcgggggcactcgttaaca 38452146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 336 - 433
Target Start/End: Complemental strand, 2964146 - 2964049
Alignment:
Q  336 aaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaa 433  Q
    ||||||||||||||||| ||||||||||||||||||| ||||| |||| |||| ||| | ||| |||||||||||||| |||||||||||||||||||    
T  2964146 aaatagtaacttatcataaaaatatgtgtaatcaatgtatcgaaaatcaaaatttttaatttttttataaaataatttcttcttttagaatctttaaa 2964049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 331 - 463
Target Start/End: Complemental strand, 16878809 - 16878677
Alignment:
Q  331 cctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatcttt 430  Q
    |||||||||||||||||  ||| ||||||| |||||||||||||| |||||||||||||||| ||||| |||| ||||||||| |  || | ||||||||    
T  16878809 cctttaaatagtaactttgcataaaaatatttgtaatcaatgcattgagaatcgaaatatttaacttttttatgaaataatttctctttattgaatcttt 16878710  T
Q  431 aaagagtgtctcggaggcactggttaacaagac 463  Q
    |||||||||| ||||  |||  |||||||||||    
T  16878709 aaagagtgtcccggaaacacctgttaacaagac 16878677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 325 - 436
Target Start/End: Original strand, 44391426 - 44391537
Alignment:
Q  325 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatattt-gactttattataaaataatttattcttttag 423  Q
    ||||| ||||||||| |||||||   |||||||||| | ||||||||||||  | ||||||||||||| |||||| ||||||||||||||||||||||||    
T  44391426 ttaagacctttaaatggtaactttgtatgaaaatatatataatcaatgcattaaaaatcgaaatattttgacttt-ttataaaataatttattcttttag 44391524  T
Q  424 aatctttaaagag 436  Q
    |||||||||||||    
T  44391525 aatctttaaagag 44391537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 321 - 397
Target Start/End: Original strand, 46684550 - 46684626
Alignment:
Q  321 ctagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactt 397  Q
    ||||||||||||||||||| |||| ||||||||||||||| |||||||||||| |||| ||||||||||||||||||    
T  46684550 ctagttaaggcctttaaatggtaatttatcatgaaaatatatgtaatcaatgcgtcgaaaatcgaaatatttgactt 46684626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 349 - 440
Target Start/End: Complemental strand, 5248179 - 5248088
Alignment:
Q  349 tcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtc 440  Q
    |||| ||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||| |||||||  |||| ||||||| ||||    
T  5248179 tcataaaaatatgtgtaatcaatgcatcaataatcgaaatatttgacttttttataaaataatttcttcttttgaaatccttaaagaatgtc 5248088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 346 - 438
Target Start/End: Complemental strand, 2741260 - 2741168
Alignment:
Q  346 ttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 438  Q
    |||| |||||||||||||||||||||||||||  |||| |||||||||| ||| | |||||||||||| |||||||| |||| ||||||||||    
T  2741260 ttattatgaaaatatgtgtaatcaatgcatcggaaatcaaaatatttgattttttaataaaataattttttcttttaaaatccttaaagagtg 2741168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 322 - 440
Target Start/End: Original strand, 15034793 - 15034911
Alignment:
Q  322 tagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatc-aatgcatcgagaatcgaaatatttgactttattataaaataatttattcttt 420  Q
    |||||||||||||||||  ||||||||| ||||||||| |||||||| ||||||| |   |||||||||||||||||| |||||||||| ||| || | |    
T  15034793 tagttaaggcctttaaaaggtaacttattatgaaaatacgtgtaatcaaatgcattggatatcgaaatatttgacttt-ttataaaatattttcttttct 15034891  T
Q  421 tagaatctttaaagagtgtc 440  Q
    | ||||| ||||||||||||    
T  15034892 tggaatccttaaagagtgtc 15034911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 327 - 435
Target Start/End: Complemental strand, 43670517 - 43670409
Alignment:
Q  327 aaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaat 426  Q
    |||| |||||||| |||| ||||||| |||| || |||||||| |||||||| |||| |||| ||||| ||| ||||||||| |||| ||| |||| |||    
T  43670517 aaggtctttaaatggtaatttatcataaaaacatatgtaatcagtgcatcgaaaatcaaaatctttgatttttttataaaattatttcttcatttaaaat 43670418  T
Q  427 ctttaaaga 435  Q
    |||||||||    
T  43670417 ctttaaaga 43670409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 317 - 392
Target Start/End: Original strand, 47305516 - 47305592
Alignment:
Q  317 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaa-tcgaaatattt 392  Q
    ||||||||||||||  ||||||| |||||||||||||||||||||||||||| ||| ||||| || |||||||||||    
T  47305516 ggcactagttaaggtgtttaaatggtaacttatcatgaaaatatgtgtaatctatggatcgaaaattcgaaatattt 47305592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 354 - 443
Target Start/End: Original strand, 676400 - 676488
Alignment:
Q  354 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcg 443  Q
    ||||||||||||||||||||||  | ||||||||||||| ||||| |||  ||||||||  || ||||||||| ||||||||||||||||    
T  676400 aaaatatgtgtaatcaatgcatttaaaatcgaaatatttaacttt-ttaataaataattacttattttagaatgtttaaagagtgtctcg 676488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 352 - 451
Target Start/End: Original strand, 37352436 - 37352535
Alignment:
Q  352 tgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcact 451  Q
    ||||||| |||||||| ||||||| |  ||| ||||||||||||||| | ||  |||||||| || |||| ||||| ||||||| |||||||||||||||    
T  37352436 tgaaaatttgtgtaattaatgcattggaaattgaaatatttgactttttaatggaataatttcttgtttttgaatccttaaagaatgtctcggaggcact 37352535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 362 - 446
Target Start/End: Original strand, 33887887 - 33887971
Alignment:
Q  362 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggag 446  Q
    |||||||||||||| || ||| ||||||||||||||| ||| | |||||||  || |||| ||||  ||||||||||||||||||    
T  33887887 tgtaatcaatgcattgaaaattgaaatatttgacttttttaaagaataattatttattttggaatgcttaaagagtgtctcggag 33887971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 463
Target Start/End: Original strand, 36015002 - 36015141
Alignment:
Q  319 cactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattct 418  Q
    |||||||||||| |||||||  ||||||||     |||||| |||||||||||  || || ||| || |||||||| ||| |||||||||||||| || |    
T  36015002 cactagttaaggtctttaaaaggtaactta-----aaaatacgtgtaatcaataaattgaaaattgacatatttgatttttttataaaataatttctttt 36015096  T
Q  419 tttagaatctttaaagagtgtctcggaggcactggttaacaagac 463  Q
    |||  |||| ||||||| |||| ||||| || | |||||||||||    
T  36015097 tttgaaatccttaaagaatgtcccggagacattcgttaacaagac 36015141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 437
Target Start/End: Original strand, 36285774 - 36285887
Alignment:
Q  323 agttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttga-ctttattataaaataatttattctttt 421  Q
    ||||||| ||||||||  |||||||||||| ||||||  ||||||||||| ||||  |||| ||||||||||  ||| |||||||||  ||| |||||||    
T  36285774 agttaagtcctttaaaatgtaacttatcataaaaata--tgtaatcaatgtatcggaaatcaaaatatttgattttttttataaaatgctttcttctttt 36285871  T
Q  422 agaatctttaaagagt 437  Q
    | ||| ||||||||||    
T  36285872 aaaatttttaaagagt 36285887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 380 - 463
Target Start/End: Original strand, 45375399 - 45375483
Alignment:
Q  380 aatcgaaatatttgactttattataaaataa-tttattcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 463  Q
    |||| |||||||| ||||| |||||| |||| ||| ||||||||||||| |||||||||| | |||||||||| ||||| |||||    
T  45375399 aatcaaaatatttaacttttttataacataagtttcttcttttagaatccttaaagagtgccccggaggcactcgttaataagac 45375483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 351 - 398
Target Start/End: Complemental strand, 15995971 - 15995924
Alignment:
Q  351 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgacttt 398  Q
    ||||||||||||||||||||||||| || ||||||||||||| |||||    
T  15995971 atgaaaatatgtgtaatcaatgcattgaaaatcgaaatatttaacttt 15995924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 351 - 460
Target Start/End: Complemental strand, 35754126 - 35754017
Alignment:
Q  351 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcac 450  Q
    ||||||| ||||||||| ||||||| || |||||||||| |||| | | |||||||||||||| || ||||  |||  ||||||||||| || ||| |||    
T  35754126 atgaaaacatgtgtaattaatgcattgaaaatcgaaatacttgattattttataaaataatttctttttttgaaattcttaaagagtgtttcagagacac 35754027  T
Q  451 tggttaacaa 460  Q
    | ||| ||||    
T  35754026 tcgttgacaa 35754017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 411
Target Start/End: Complemental strand, 44495314 - 44495238
Alignment:
Q  335 taaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataat 411  Q
    |||||| |||||| | || ||||||||||||||||||| ||  | ||||||||||||| | ||| ||||||||||||    
T  44495314 taaataataacttgttataaaaatatgtgtaatcaatgaattaaaaatcgaaatatttaaattttttataaaataat 44495238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 398
Target Start/End: Complemental strand, 14574815 - 14574768
Alignment:
Q  351 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgacttt 398  Q
    ||||||||||||||||||||||||| || ||||||| ||||| |||||    
T  14574815 atgaaaatatgtgtaatcaatgcattgaaaatcgaagtatttaacttt 14574768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 469
Target Start/End: Original strand, 35599837 - 35599944
Alignment:
Q  362 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaag 461  Q
    |||| ||||||||| || | | ||| ||||||| ||| ||| | ||||||||  |  ||||| || |||||||||| ||||||||||||| |||||||||    
T  35599837 tgtattcaatgcattgaaatttgaactatttgaattttttaaagaataatttcctaatttagtatgtttaaagagtatctcggaggcactcgttaacaag 35599936  T
Q  462 acaattaa 469  Q
    || |||||    
T  35599937 accattaa 35599944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 351 - 440
Target Start/End: Complemental strand, 31477175 - 31477085
Alignment:
Q  351 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataattt-attcttttagaatctttaaagagtgtc 440  Q
    ||||||||||||||||||||||||| || |||| |  | |||||| || ||||| ||||||||  || |||||||||| ||||| ||||||    
T  31477175 atgaaaatatgtgtaatcaatgcattgaaaatcaatttttttgacgtttttatacaataatttcttttttttagaatccttaaatagtgtc 31477085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 464
Target Start/End: Original strand, 10031945 - 10032058
Alignment:
Q  351 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcac 450  Q
    |||||||  |||||||||||||||| |  |||||||| |||| ||||| | | |||||||||  |  |||| ||||  |||||||||||| ||| |||||    
T  10031945 atgaaaaagtgtgtaatcaatgcattggaaatcgaaacatttaactttttaaaaaaataattactaattttggaatgcttaaagagtgtcccgggggcac 10032044  T
Q  451 tggttaacaagaca 464  Q
    | |||||| |||||    
T  10032045 tcgttaacgagaca 10032058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 441
Target Start/End: Original strand, 25120218 - 25120271
Alignment:
Q  388 tatttgactttattataaaataatttattcttttagaatctttaaagagtgtct 441  Q
    ||||||||||| ||| |||||||||||||  |||  ||||||||||||||||||    
T  25120218 tatttgacttttttaaaaaataatttattaatttgaaatctttaaagagtgtct 25120271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 392
Target Start/End: Complemental strand, 27359466 - 27359398
Alignment:
Q  325 ttaaggcctttaaatagtaacttatc-atgaaaatatgtgtaatcaatgcatcgagaatcgaaatattt 392  Q
    ||||| ||||||||||||||||| |  ||||||| | ||||||||||||||| |  |||||||||||||    
T  27359466 ttaagacctttaaatagtaacttttttatgaaaacaagtgtaatcaatgcattggaaatcgaaatattt 27359398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 317 - 463
Target Start/End: Complemental strand, 31206426 - 31206280
Alignment:
Q  317 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 416  Q
    |||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||  |||| |||||||||| ||| |||||||||||||| |     
T  31206426 ggcattagttaaggcctttaaatagtaatttatcataaaaatatgtgtaatcaatgcatcggaaatcaaaatatttgatttttttataaaataatttcta 31206327  T
Q  417 cttttagaatctttaaagagtgtctcggaggcactggttaacaagac 463  Q
    ||||| ||||| |||||||||  ||||  || ||| |||||||||||    
T  31206326 ctttttgaatccttaaagagtacctcgtggggactcgttaacaagac 31206280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 325 - 433
Target Start/End: Complemental strand, 38956992 - 38956884
Alignment:
Q  325 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 424  Q
    |||||| ||||||||  ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||| |||||   |||||||||    
T  38956992 ttaaggtctttaaatgataacttatcatgaaaatatgtgtaatcaatgcatcggaaatcgaaatatttgacttttttataaattaattacatcttttaga 38956893  T
Q  425 atctttaaa 433  Q
    ||| |||||    
T  38956892 atccttaaa 38956884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 316 - 440
Target Start/End: Original strand, 5217747 - 5217869
Alignment:
Q  316 aggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttat 415  Q
    ||||||||||||||  ||||| || |||| ||||||| |||||||||||||||||| |||||  ||||||||||||||||||| ||||||||| ||||||    
T  5217747 aggcactagttaagatctttatatggtaatttatcataaaaatatgtgtaatcaatacatcggaaatcgaaatatttgacttttttataaaatcatttat 5217846  T
Q  416 tcttttagaatctttaaagagtgtc 440  Q
      |||| ||||| ||||||||||||    
T  5217847 --tttttgaatccttaaagagtgtc 5217869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 333 - 438
Target Start/End: Original strand, 45368729 - 45368834
Alignment:
Q  333 tttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaa 432  Q
    ||||||| |||||||||||||||||||||| |||||| |||||||| ||| ||||||||| ||||| |||||||||||||| || |||| ||||| ||||    
T  45368729 tttaaatggtaacttatcatgaaaatatgtataatcattgcatcgaaaattgaaatatttaacttttttataaaataatttctttttttggaatccttaa 45368828  T
Q  433 agagtg 438  Q
    ||||||    
T  45368829 agagtg 45368834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 324 - 437
Target Start/End: Original strand, 5020051 - 5020162
Alignment:
Q  324 gttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttag 423  Q
    |||||||||||||||| ||||||| ||||||||||  |||||||||||| ||||  ||| ||||| ||||||||| ||||||||| |||| |||||||||    
T  5020051 gttaaggcctttaaatggtaacttgtcatgaaaat--gtgtaatcaatgtatcggaaattgaaatctttgacttttttataaaattatttcttcttttag 5020148  T
Q  424 aatctttaaagagt 437  Q
    |||| |||||||||    
T  5020149 aatccttaaagagt 5020162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 325 - 436
Target Start/End: Original strand, 20169716 - 20169827
Alignment:
Q  325 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatattt-gactttattataaaataatttattcttttag 423  Q
    ||||| ||||||||| |||||||   |||||||||| | ||||||||||||  | ||||||||||||| |||||| ||||||||||||||||||||||||    
T  20169716 ttaagacctttaaatggtaactttgtatgaaaatatatataatcaatgcattaaaaatcgaaatattttgacttt-ttataaaataatttattcttttag 20169814  T
Q  424 aatctttaaagag 436  Q
    |||||||||||||    
T  20169815 aatctttaaagag 20169827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 322 - 463
Target Start/End: Complemental strand, 9633040 - 9632898
Alignment:
Q  322 tagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataattta--ttctt 419  Q
    ||||||||| |||||||| | || |||| ||||||||||||||||||||||||||   |||| |||||||||||||| || || |||  ||||  || ||    
T  9633040 tagttaaggtctttaaatggcaatttattatgaaaatatgtgtaatcaatgcatctgaaatcaaaatatttgacttt-ttttataattttttattttttt 9632942  T
Q  420 ttagaatctttaaagagtgtctcggaggcactggttaacaagac 463  Q
    ||  ||||||||||||||| | ||||| |||| |||||||||||    
T  9632941 ttgaaatctttaaagagtgacccggagacacttgttaacaagac 9632898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 384 - 466
Target Start/End: Complemental strand, 33636767 - 33636685
Alignment:
Q  384 gaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaagacaat 466  Q
    |||| |||||||||| |||| ||||||||| | ||||||||||  ||||||||||||||||  ||||| ||||| ||||||||    
T  33636767 gaaacatttgacttttttatgaaataatttctccttttagaatgcttaaagagtgtctcgggcgcactcgttaataagacaat 33636685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 334 - 460
Target Start/End: Original strand, 39691121 - 39691247
Alignment:
Q  334 ttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaa 433  Q
    ||||||||||| || | |||||||| |||||| ||||||||| || ||| ||| ||||||||||| ||| | |||||||| ||  | | ||||  |||||    
T  39691121 ttaaatagtaattttttatgaaaatttgtgtattcaatgcattgaaaattgaactatttgacttttttaaagaataattttttaatgtggaatgcttaaa 39691220  T
Q  434 gagtgtctcggaggcactggttaacaa 460  Q
    ||||||||||  |||||| ||||||||    
T  39691221 gagtgtctcgagggcactcgttaacaa 39691247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 325 - 438
Target Start/End: Original strand, 7044329 - 7044442
Alignment:
Q  325 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 424  Q
    ||||| |||||| ||| ||||||   ||||||| | |||||||||| || |  | ||||||||| ||||||||| | ||||| |||||| ||||||||||    
T  7044329 ttaagacctttatataataactttgtatgaaaacacgtgtaatcaaagccttaaaaatcgaaatgtttgactttttaataaattaatttcttcttttaga 7044428  T
Q  425 atctttaaagagtg 438  Q
    ||| ||||||||||    
T  7044429 atccttaaagagtg 7044442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 363 - 463
Target Start/End: Original strand, 24103087 - 24103187
Alignment:
Q  363 gtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaaga 462  Q
    ||||||| |||||||  |||||||| ||||||| || | | |||||||||| || |||||||||  ||||||||||||||||| ||| | |||||| |||    
T  24103087 gtaatcattgcatcggaaatcgaaacatttgaccttttaaaaaaataatttcttattttagaatgcttaaagagtgtctcggaagcaatcgttaacgaga 24103186  T
Q  463 c 463  Q
    |    
T  24103187 c 24103187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 463
Target Start/End: Original strand, 39932721 - 39932813
Alignment:
Q  371 tgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 463  Q
    ||||| || ||| ||||||||||||||| ||||  ||| |||  |||||||||||| |||||||||||| ||||||| | | |||||||||||    
T  39932721 tgcatggaaaattgaaatatttgacttttttatggaattattacttcttttagaatgtttaaagagtgtttcggaggaattcgttaacaagac 39932813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 325 - 463
Target Start/End: Original strand, 10335020 - 10335159
Alignment:
Q  325 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttatt-ataaaataatttattcttttag 423  Q
    ||||||||||||||| |||| || |  ||||||| ||| |||| ||||||| || |||   ||||||||||||| || ||| |||||||||||||||| |    
T  10335020 ttaaggcctttaaattgtaattttttgtgaaaatttgtataattaatgcattgaaaattataatatttgactttttttatagaataatttattcttttgg 10335119  T
Q  424 aatctttaaagagtgtctcggaggcactggttaacaagac 463  Q
    |||  ||||||||||   || | ||||| |||||||||||    
T  10335120 aattcttaaagagtgctccgaatgcactcgttaacaagac 10335159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 438
Target Start/End: Original strand, 36819755 - 36819793
Alignment:
Q  400 ttataaaataatttattcttttagaatctttaaagagtg 438  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  36819755 ttataaaataattttttcttttagaatctttaaagagtg 36819793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 463
Target Start/End: Original strand, 37564393 - 37564468
Alignment:
Q  388 tatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 463  Q
    ||||||||||| ||| | |||||||| ||  ||||| || ||||||||||||| | |||||||| |||||||||||    
T  37564393 tatttgacttttttaaagaataatttcttaatttagcatgtttaaagagtgtcccagaggcactcgttaacaagac 37564468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 400 - 462
Target Start/End: Original strand, 2124141 - 2124203
Alignment:
Q  400 ttataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaaga 462  Q
    ||||| |||||||| |||||||||||| |||||||| ||||||||   |||| ||||||||||    
T  2124141 ttatagaataatttcttcttttagaatgtttaaagaatgtctcgggaacactcgttaacaaga 2124203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 403 - 463
Target Start/End: Original strand, 5968377 - 5968437
Alignment:
Q  403 taaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 463  Q
    ||||||||||  || ||||||||| ||||||||||| |  ||||||||| |||||||||||    
T  5968377 taaaataattgcttgttttagaatgtttaaagagtgccctggaggcactcgttaacaagac 5968437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 351 - 463
Target Start/End: Complemental strand, 22209488 - 22209376
Alignment:
Q  351 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcac 450  Q
    |||||||||| |||||||||||  | |  |||| |||||||| ||||| |||   |||||||  |||||||| |||  |||||||||||| ||||| |||    
T  22209488 atgaaaatatatgtaatcaatgtcttggaaatcaaaatatttaacttttttaaggaataattgcttcttttaaaatgcttaaagagtgtcccggagacac 22209389  T
Q  451 tggttaacaagac 463  Q
    | ||||| |||||    
T  22209388 ttgttaataagac 22209376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 317 - 438
Target Start/End: Original strand, 12383008 - 12383129
Alignment:
Q  317 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 416  Q
    ||||||||||||| |||||||||||||| ||||||| ||||||||| ||||||||||||||  |||| |||||||| ||||| |||||||||||||| |     
T  12383008 ggcactagttaagtcctttaaatagtaatttatcataaaaatatgtataatcaatgcatcggaaatcaaaatatttaacttttttataaaataatttctc 12383107  T
Q  417 cttttagaatctttaaagagtg 438  Q
    |||||  |||  ||||||||||    
T  12383108 cttttgaaattcttaaagagtg 12383129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 325 - 438
Target Start/End: Complemental strand, 16442188 - 16442075
Alignment:
Q  325 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 424  Q
    ||||| |||||| ||||||||||   ||||||| |||||||||||||   | || |||| |||| ||||||||| ||||||| |||||||||||||||||    
T  16442188 ttaagacctttatatagtaactttgtatgaaaacatgtgtaatcaatattttgaaaatcaaaatgtttgacttttttataaactaatttattcttttaga 16442089  T
Q  425 atctttaaagagtg 438  Q
    ||||||||||||||    
T  16442088 atctttaaagagtg 16442075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 340 - 435
Target Start/End: Complemental strand, 8176419 - 8176324
Alignment:
Q  340 agtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaaga 435  Q
    |||||||||| ||||||||||||||||| |||||||||| ||| ||||| ||||||||| ||| ||| | |||| ||||||||||||| |||||||    
T  8176419 agtaacttattatgaaaatatgtgtaattaatgcatcgaaaattgaaatttttgacttttttaaaaatttatttcttcttttagaatccttaaaga 8176324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 437
Target Start/End: Complemental strand, 12307904 - 12307821
Alignment:
Q  354 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagt 437  Q
    |||||||||||||| |||| || || |||  |||||||||||||| |||||||||||||| |||||||  |||| |||||||||    
T  12307904 aaaatatgtgtaattaatgtattgaaaattaaaatatttgacttttttataaaataatttcttcttttgaaatccttaaagagt 12307821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 334 - 463
Target Start/End: Original strand, 31702747 - 31702874
Alignment:
Q  334 ttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaa 433  Q
    |||||||||||||| | || ||||||||||||||||||||||    |||  ||||| || ||||| |||||||||||||| |||||||  |||  |||||    
T  31702747 ttaaatagtaactttttataaaaatatgtgtaatcaatgcattagaaattaaaatacttaacttttttataaaataatttcttcttttgaaattcttaaa 31702846  T
Q  434 gagtgtctcggaggcactggttaacaagac 463  Q
    ||||| | ||||  |||| |||||||||||    
T  31702847 gagtgccccgga--cactcgttaacaagac 31702874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 460
Target Start/End: Complemental strand, 7465558 - 7465451
Alignment:
Q  352 tgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcact 451  Q
    ||||||| | ||||||||||||||||  ||| ||||||||||||||| ||||  || ||||| |||||| |||||| ||||| |||| | ||| ||||||    
T  7465558 tgaaaatttatgtaatcaatgcatcggaaattgaaatatttgacttttttatggaacaatttcttctttaagaatccttaaaaagtg-cccgggggcact 7465460  T
Q  452 ggttaacaa 460  Q
     ||||||||    
T  7465459 cgttaacaa 7465451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 394
Target Start/End: Original strand, 22695473 - 22695549
Alignment:
Q  319 cactagttaaggcctttaaatagtaacttatcatgaaaa-tatgtgtaatcaatgcatcgagaatcgaaatatttga 394  Q
    |||| |||||||| ||||||| ||||||| | || |||| ||||||||||||||||||||| ||| |||||||||||    
T  22695473 cactcgttaaggcttttaaatggtaactttttattaaaaatatgtgtaatcaatgcatcgaaaattgaaatatttga 22695549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 391 - 462
Target Start/End: Original strand, 22696000 - 22696071
Alignment:
Q  391 ttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaaga 462  Q
    |||| ||| |||||||||||||| ||||||| ||||| ||||||||||  || |||||||| ||||||||||    
T  22696000 ttgatttttttataaaataatttcttcttttggaatccttaaagagtgcatcagaggcactcgttaacaaga 22696071  T

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Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 336 - 434
Target Start/End: Complemental strand, 35241509 - 35241410
Alignment:
Q  336 aaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactt-tattataaaataatttattcttttagaatctttaaag 434  Q
    |||| |||||||||||| ||||||||| |||||||||||||   |||| |||||||| | || | |||||||||||||| || ||||| |||| ||||||    
T  35241509 aaatggtaacttatcataaaaatatgtataatcaatgcatcagaaatcaaaatatttaatttcttttataaaataatttctttttttaaaatccttaaag 35241410  T

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Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 325 - 438
Target Start/End: Original strand, 6048268 - 6048381
Alignment:
Q  325 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 424  Q
    ||||| |||||| ||||||||||   ||||||| |||||||||||||   | |  |||  |||| ||| ||||| ||||||| |||||| ||||||||||    
T  6048268 ttaagacctttatatagtaactttgtatgaaaacatgtgtaatcaatatcttggaaattaaaatgtttcacttttttataaattaatttcttcttttaga 6048367  T
Q  425 atctttaaagagtg 438  Q
    || |||||||||||    
T  6048368 atttttaaagagtg 6048381  T

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Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 32045160 - 32045211
Alignment:
Q  136 cattaacttttgttgatttaaatgtctttttataaaaaggatcggagggagta 188  Q
    |||||||||||||||| |||||| || ||||||||| ||||||||||||||||    
T  32045160 cattaacttttgttgagttaaatatc-ttttataaataggatcggagggagta 32045211  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 435
Target Start/End: Complemental strand, 26311889 - 26311807
Alignment:
Q  354 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgact-ttattataaaataatttattcttttagaatctttaaaga 435  Q
    |||||||||||||| |||| || || |||| |||||||| ||  || ||||||| ||||||||||||| |||||| |||||||    
T  26311889 aaaatatgtgtaattaatgtattgaaaatcaaaatatttaaccatttttataaattaatttattctttcagaatccttaaaga 26311807  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 463
Target Start/End: Complemental strand, 30509387 - 30509286
Alignment:
Q  362 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaag 461  Q
    |||||||||||||| || ||||||||| ||||| ||| ||| | |||||||  || |||| | ||  |||||||||||  ||||| |||| |||||||||    
T  30509387 tgtaatcaatgcattgaaaatcgaaatgtttgatttttttaaagaataattgcttattttggtatgcttaaagagtgttccggagacactcgttaacaag 30509288  T
Q  462 ac 463  Q
    ||    
T  30509287 ac 30509286  T

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Target: scaffold0246 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 362 - 463
Target Start/End: Original strand, 18144 - 18245
Alignment:
Q  362 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaag 461  Q
    ||||||||||| |||| |||| ||||||||||||||| |||| | ||||||| ||||||||| ||| |||||||||||| | |||||||| ||| |||||    
T  18144 tgtaatcaatgtatcgggaattgaaatatttgacttttttatgacataatttcttcttttagcatccttaaagagtgtcccagaggcactcgtttacaag 18243  T
Q  462 ac 463  Q
    ||    
T  18244 ac 18245  T

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