View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_302 (Length: 243)
Name: NF9795A_low_302
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_302 |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 30573875 - 30573653
Alignment:
| Q |
1 |
atgtgaaagctttgttttgttgcttctgcaaattcacagtagatataacatataatgcaagaaaatgtttatccaaacatatgcttaatggtttatcagt |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30573875 |
atgtgaaagcttggttttgttgcttctgcaaattcacagtagatataacatataatgcaagaaaatgtttatccaaacatatgcttaatggtttatcagt |
30573776 |
T |
|
| Q |
101 |
gtatttatatttggtttgtgagagagattaaaagaaatatcactactagtcatggttacattcatattataaaaagtttacccttaatattatcctcaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
30573775 |
gtatttatatttggtttgtgagagagattaaaagaaatatcattactagtcatggttacattcatattataaaaagtttacccataatattatcctcaac |
30573676 |
T |
|
| Q |
201 |
ggatctcacaatgatatctgaaa |
223 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
30573675 |
ggatctcacaatgatatctgaaa |
30573653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 30570399 - 30570277
Alignment:
| Q |
1 |
atgtgaaagctttgttttgttgcttctgcaaattcacagtagatataacatataatgcaagaaaatgtttatccaaacatatgcttaatggtttatcagt |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
30570399 |
atgtgaaagcttggttttgttgcttctgcaaattcacagtagatataacatataatgcaagaaaatgtttatccaaacatatgcttaatggtttattagt |
30570300 |
T |
|
| Q |
101 |
gtatttatatttggtttgtgaga |
123 |
Q |
| |
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|||||||||||||| |||||||| |
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| T |
30570299 |
gtatttatatttggcttgtgaga |
30570277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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