View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_304 (Length: 242)
Name: NF9795A_low_304
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_304 |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 12 - 242
Target Start/End: Complemental strand, 10079074 - 10078844
Alignment:
| Q |
12 |
ggacatcatcatgtcgtgaattattttctggaccgagttctgagcatcattactagggtcggcttcaccagaaacagatgcctgctgttgttgcatggaa |
111 |
Q |
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| T |
10079074 |
ggacatcatcatgtcgtgaattattttctggaccgagttctgagcatcattactagggtcagcttcaccagaaacagatgcctgctgttgttgcatggaa |
10078975 |
T |
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| Q |
112 |
atattagctggtgagtttactgtacccatgtgatttgcagatgttaagccagggtgagaagtttgtgggttgttgttagatgaggacggtgttggtgagt |
211 |
Q |
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| T |
10078974 |
atattagctggtgagtttactgtacccatgtgatttgcagatgttaagccagggtgagaagtttgcgggttgttgttagatgaggacggtgttggtgaat |
10078875 |
T |
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| Q |
212 |
gaaaaggggacgagtttggttgggcctgtgg |
242 |
Q |
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| T |
10078874 |
gaaaaggggacgagtttggttgtgcctgtgg |
10078844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 40776005 - 40776078
Alignment:
| Q |
172 |
gtttgtgggttgttgttagatgaggacggtgt---tggtgagtgaaaaggggacgagtttggttgggcctgtgg |
242 |
Q |
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| T |
40776005 |
gtttgtggggggttattagatgaggatggtgtaggtggtgactgaaaaggggatgagtttggctgggcctgtgg |
40776078 |
T |
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