View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_32 (Length: 421)
Name: NF9795A_low_32
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_32 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 6 - 421
Target Start/End: Complemental strand, 17740866 - 17740455
Alignment:
| Q |
6 |
tgagatggacatcacatatttaccaaaatccttatgacattgagtttatgggtc-tgtcaatttgttaagtgttcaactccatttttctaagcaatacga |
104 |
Q |
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| T |
17740866 |
tgagttggacgtcacatgtttaccaaaatccttatgacattgagtttctgggtcctgtcaatttgttaagtgttcaactccatttttctaagcaatacga |
17740767 |
T |
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| Q |
105 |
gatttctaattaactcacacttgtcgcacaacaaaaaggtcttcgacccttggtgaaatgtatgttatctattccagttcaactcttgactcacctaaag |
204 |
Q |
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| T |
17740766 |
gatttctaa----ctcacacttgtcgcacaacaaaaaggtcttcgacccttggtgaaatgtatgttatctattccagttcaactcttgactcacctaaag |
17740671 |
T |
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| Q |
205 |
ccctcatttacttgagcattagagtcctagcacgaacacagcccctctcgaagtagcaatgccatcctccattgtcttcaagcaactccgggatccgaca |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
17740670 |
ccctcatttacttgagcattagagtcctagcacgaacatagcccctctcgaagtagcaatgccatcctccattgtcttcaagcaacttcgggatccgaca |
17740571 |
T |
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| Q |
305 |
gtcgttgtagattcactactccggataagatgacaattatgtagtaataatttcttctgctcttaggagcatattgtgattatgtcgtgataagagatca |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17740570 |
gtcgttgtagattcactactccggataagatgacaattatgtagt-ataatttcttctgctcttaggagcatattgtgattatgtcgtgataagagatca |
17740472 |
T |
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| Q |
405 |
tatctatatgttaatga |
421 |
Q |
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| T |
17740471 |
tatctatatgttaatga |
17740455 |
T |
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