View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9795A_low_321 (Length: 239)
Name: NF9795A_low_321
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_321 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 21 - 217
Target Start/End: Original strand, 38883894 - 38884090
Alignment:
| Q |
21 |
ctatgatctgttctgtgtatcccttgttacaaagttgctcggtcgcatatactaccacgttgatggtgctgcgaagcccggtacattgcctcccaatgta |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38883894 |
ctatgatctgttctgtgtatcccttgttacaaagttgctcggtcgcatatactaccacgttgatggtgctgcgaagcccggtacattgcctcccaatgta |
38883993 |
T |
|
| Q |
121 |
tcagctgctgtgaatggtgtagctttctgtggaacactttcagggcaacttttctttggctggcttggtgataagatgggcaggaaaaaagtctatg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38883994 |
tcagctgctgtgaatggtgtagctttctgtggaacactttcagggcaacttttctttggctggcttggtgataagatgggcaggaaaaaagtctatg |
38884090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 21 - 217
Target Start/End: Original strand, 38893086 - 38893282
Alignment:
| Q |
21 |
ctatgatctgttctgtgtatcccttgttacaaagttgctcggtcgcatatactaccacgttgatggtgctgcgaagcccggtacattgcctcccaatgta |
120 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||| || |||||||| ||||| ||||||||||| | |||||||||||||||||| ||||||||| |
|
|
| T |
38893086 |
ctatgatctgttctgcatatcccttgttaccaagttgctgggacgcatatattaccatgttgatggtgccgggaagcccggtacattgccacccaatgta |
38893185 |
T |
|
| Q |
121 |
tcagctgctgtgaatggtgtagctttctgtggaacactttcagggcaacttttctttggctggcttggtgataagatgggcaggaaaaaagtctatg |
217 |
Q |
| |
|
|||||||| || ||||| || ||||||||||| |||||| ||||||| ||||||||||||||||||||||||||| |||| ||||| ||||| |||| |
|
|
| T |
38893186 |
tcagctgcggttaatggggttgctttctgtggtacacttacagggcagcttttctttggctggcttggtgataagttgggtaggaagaaagtgtatg |
38893282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 106 - 217
Target Start/End: Complemental strand, 37316106 - 37315995
Alignment:
| Q |
106 |
ttgcctcccaatgtatcagctgctgtgaatggtgtagctttctgtggaacactttcagggcaacttttctttggctggcttggtgataagatgggcagga |
205 |
Q |
| |
|
|||||||| ||||||||||| || || |||||||| ||| ||||||| || || |||| |||||||||||||| |||||||| || || ||||| || | |
|
|
| T |
37316106 |
ttgcctccaaatgtatcagcagcagtaaatggtgttgctctctgtggcactctagcaggccaacttttctttggttggcttggggacaaaatgggaagaa |
37316007 |
T |
|
| Q |
206 |
aaaaagtctatg |
217 |
Q |
| |
|
||||||| |||| |
|
|
| T |
37316006 |
aaaaagtttatg |
37315995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 200
Target Start/End: Original strand, 33115133 - 33115200
Alignment:
| Q |
133 |
aatggtgtagctttctgtggaacactttcagggcaacttttctttggctggcttggtgataagatggg |
200 |
Q |
| |
|
|||||||| |||||| ||||| |||| |||| |||||||||||||| ||||||||||| || ||||| |
|
|
| T |
33115133 |
aatggtgttgctttcagtggagcactggcaggacaacttttctttggttggcttggtgacaaaatggg |
33115200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University