View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_329 (Length: 238)
Name: NF9795A_low_329
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_329 |
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Alignment Details
Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 6 - 235
Target Start/End: Original strand, 29524600 - 29524829
Alignment:
| Q |
6 |
tgtgaagactagttggccttgtgtcaagtgtagtaggcctattatgttatgctcagagcctttctttcaatcgtttaattggaaaatggaacattctaaa |
105 |
Q |
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| T |
29524600 |
tgtggagaatagttggaattgtgtcaagtgtagtaggcctattatgtaatgctcagagccattctttcaatcgtttcattggaaaatggaacactctcaa |
29524699 |
T |
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| Q |
106 |
gttctttttgtattgggtgctttccttggttatctttactaccatgttgtttgtaaagcagttcttaccatccacacgatatggtcatataaaaatctac |
205 |
Q |
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| T |
29524700 |
gttctttctgtatggggtgttttccttggttatctttactaccatgttgtttgtaaagccgttctcaacatccacacgatatggtcatataaaaccctac |
29524799 |
T |
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| Q |
206 |
acgagctttgcagttttgatgtccatctca |
235 |
Q |
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| T |
29524800 |
acgggcttcacagttttgatgatcatctca |
29524829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 29612384 - 29612618
Alignment:
| Q |
1 |
cgcattgtgaagactagttggccttgtgtcaagtgtagtaggcctattatgttatgctcagagcctttctttcaatcgtttaattggaaaatggaacatt |
100 |
Q |
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| T |
29612384 |
cgcattttggagactagttggccttgtgtcaagtgtatttggcctattgtgttatgctcagagcccttctttcaatcgtttaattggaagatggaacatt |
29612483 |
T |
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| Q |
101 |
ctaaagttctttttgtattgggtgctttccttggttatctttactaccatgttgtttgtaaagcagttcttaccatccacacgatatggtcatataaaaa |
200 |
Q |
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| T |
29612484 |
gtcaagttctctctgtatggagtgttttccttggctatctttaccaccatattgtttgtaaagcagttctcaccatccacaaaatatgctcaactaaaaa |
29612583 |
T |
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| Q |
201 |
tctacacgagctttgcagttttgatgtccatctca |
235 |
Q |
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| T |
29612584 |
cttacataagctttgcagttttgatgatcatctca |
29612618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 29529070 - 29528996
Alignment:
| Q |
15 |
tagttggccttgtgtcaagtgtagtaggcctattatgttatgctcagagcctttctttcaatcgtttaattggaa |
89 |
Q |
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| T |
29529070 |
tagttgggcttatgtcaagtgtagttggcctgttatgttatgctctgagcccttctttcaatcgattaattggaa |
29528996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 92
Target Start/End: Complemental strand, 29475394 - 29475317
Alignment:
| Q |
15 |
tagttggccttgtgtcaagtgtagtaggcctattatgttatgctcagagcctttctttcaatcgtttaattggaaaat |
92 |
Q |
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| T |
29475394 |
tagttggccttatgtcaagtatagtcggtctggtttgttatgctctgagcccttctttcaatcgattaattggaaaat |
29475317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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