View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9795A_low_334 (Length: 237)
Name: NF9795A_low_334
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_334 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 125 - 216
Target Start/End: Complemental strand, 45771116 - 45771025
Alignment:
| Q |
125 |
agattttcttgaccatggggttggatttcaaatcgtagccctgcattttcaattccctcctcacgacctctggcatcctcagcagtttcatg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45771116 |
agattttcttgaccatggggttggatttcaaatcgtagccctgcattttcaattccctcctcacgacctctggcatcctcagcagtttcatg |
45771025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 45771235 - 45771160
Alignment:
| Q |
12 |
gatggacatcgtcttcttcaaaatcattatgttcttcatcatcttcatccacatcttcaccgtcaactccagacat |
87 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45771235 |
gatggacatcgtcttcttcaaaatcattatgttcttcgtcatcttcatccacatcttcaccgtcaactccagacat |
45771160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University