View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_34 (Length: 419)
Name: NF9795A_low_34
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_34 |
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| [»] chr4 (3 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 17 - 419
Target Start/End: Original strand, 56526117 - 56526519
Alignment:
| Q |
17 |
gacatcaaggatcttggaaaattaaaatactttctcggtatggagtttgcaagatcgaaagaaggaatttttctcctcttttctcctctttttctacatc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56526117 |
gacatcaaggatcttggaaaattaaaatactttctcggtatggagtttgcaagatcgaaagaaggaatttttctcctcttttctcctctttttctacatc |
56526216 |
T |
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| Q |
117 |
tggttataacgtattgtgactctagctaatggtgcccaaacccaatcccaagggattgaaacaacctgccccctctcttccctatcagttgattttgtca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56526217 |
tggttataacgtattgtgactctagctaatggtgcccaaacccaatcccaagggattgaaacaacctgccccctctcttccctatcagttgattttgtca |
56526316 |
T |
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| Q |
217 |
tttgtgtcgcaaggtgtccatttaatttaccatctataagtctgttaacctgttttcatgattgtttaattaccttcactaaagatattggtatcctgca |
316 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56526317 |
tttgtgtcgcaaggtgtccctttaatttaccatctataagtctgttaacctgttttcatgattgtttaattaccttcactaaagatattggtatcctgca |
56526416 |
T |
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| Q |
317 |
ggatcacagttcgtgacagacgattggtgcgaaatgtgtctcatcgactctacaacctattgttaacatgttttcatgatcatttaattgccttcactga |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56526417 |
ggatcacagttcgtgacagacgattggtgcgaaatgtgtctcatcgactctacaacctattgttaacatgttttcatgatcatttaattgccttcactga |
56526516 |
T |
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| Q |
417 |
aga |
419 |
Q |
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| T |
56526517 |
aga |
56526519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 27266686 - 27266756
Alignment:
| Q |
17 |
gacatcaaggatcttggaaaattaaaatactttctcggtatggagtttgcaagatcgaaagaaggaatttt |
87 |
Q |
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| T |
27266686 |
gacatcaaggatcttggaaaattaaaatactttctcggtatggagtttgcaagatcgaaagaaggaatttt |
27266756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 29635075 - 29635005
Alignment:
| Q |
17 |
gacatcaaggatcttggaaaattaaaatactttctcggtatggagtttgcaagatcgaaagaaggaatttt |
87 |
Q |
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| T |
29635075 |
gacatcaaggatcttggaaaattaaaatactttctcggtatggagtttgcaagatcgaaagaaggaatttt |
29635005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 296588 - 296658
Alignment:
| Q |
17 |
gacatcaaggatcttggaaaattaaaatactttctcggtatggagtttgcaagatcgaaagaaggaatttt |
87 |
Q |
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| T |
296588 |
gacatcaaggatcttggaaaattaaaatactttctcggtatggagtttgcaagatcgaaagaaggaatttt |
296658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 20754122 - 20754052
Alignment:
| Q |
17 |
gacatcaaggatcttggaaaattaaaatactttctcggtatggagtttgcaagatcgaaagaaggaatttt |
87 |
Q |
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| T |
20754122 |
gacatcaaggatcttggaaaattaaaatactttctcggtatggagtttgcaagatcgaaagaaggaatttt |
20754052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 28274992 - 28275062
Alignment:
| Q |
17 |
gacatcaaggatcttggaaaattaaaatactttctcggtatggagtttgcaagatcgaaagaaggaatttt |
87 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28274992 |
gacatcaaggatcttggaaaattaaaatactttctcggtatggagtttgcaagatcgaaagaaggaatttt |
28275062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 28353742 - 28353812
Alignment:
| Q |
17 |
gacatcaaggatcttggaaaattaaaatactttctcggtatggagtttgcaagatcgaaagaaggaatttt |
87 |
Q |
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| T |
28353742 |
gacatcaaggatcttggaaaattaaaatactttctcggtatggagtttgcaagatcgaaagaaggaatttt |
28353812 |
T |
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