View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_349 (Length: 230)
Name: NF9795A_low_349
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_349 |
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Alignment Details
Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 1898870 - 1898966
Alignment:
| Q |
8 |
ttcaaattgttatttccgctggcttaggtgttatgttccttggtgatactcttcatgttggaaggtatagtaaattcaatttttgcatttgattctt |
104 |
Q |
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| T |
1898870 |
ttcaaattgttatttctgctggcttaggtgttatgtttcttggtgatactcttcatgttggaaggtatagtaaattcaatttttgcatttgattctt |
1898966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 1904075 - 1904181
Alignment:
| Q |
8 |
ttcaaattgttatttccgctggcttaggtgttatgttccttggtgatactcttcatgttggaaggtatagtaaattcaa-tttttgcatttgattctttg |
106 |
Q |
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| T |
1904075 |
ttcaaattgttatttctgctggcttgggtgttatattccttggtgatactcttcatgttggaaggtatggttatttgaattttttgcttttgattctttg |
1904174 |
T |
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| Q |
107 |
cttgaaa |
113 |
Q |
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| T |
1904175 |
cttgaaa |
1904181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 1908308 - 1908414
Alignment:
| Q |
8 |
ttcaaattgttatttccgctggcttaggtgttatgttccttggtgatactcttcatgttggaaggtatagtaaattcaa-tttttgcatttgattctttg |
106 |
Q |
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| T |
1908308 |
ttcaaattgttatttctgctggcttgggtgttatattccttggtgatactcttcatgttggaaggtatggttatttgaattttttgcttttgattctttg |
1908407 |
T |
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| Q |
107 |
cttgaaa |
113 |
Q |
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| T |
1908408 |
cttgaaa |
1908414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 1888310 - 1888404
Alignment:
| Q |
10 |
caaattgttatttccgctggcttaggtgttatgttccttggtgatactcttcatgttggaaggtatagtaaattcaatttttgcatttgattctt |
104 |
Q |
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| T |
1888310 |
caaattgttatttctgttgccttgagtgttatattccttggtgatactcttcatgttggaaggtatagttaattcaatttttgaattggattctt |
1888404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 1899070 - 1899137
Alignment:
| Q |
163 |
caacaatttgataaaactcaacagaactgttaatggttcgttccaaaccgtttagtgcaccgattatg |
230 |
Q |
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| T |
1899070 |
caacaattcgataaaattcaactgaattgttaatggttcgttccaaaccgtttagtgcaccgattatg |
1899137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 106
Target Start/End: Original strand, 1914217 - 1914285
Alignment:
| Q |
37 |
gttatgttccttggtgatactcttcatgttggaaggtatagtaaattcaatttttgcatttgattctttg |
106 |
Q |
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| T |
1914217 |
gttatattccttggtgatactcttcatcttggaaggtatggttaattcaa-ttttgcatttgattctttg |
1914285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 10 - 89
Target Start/End: Original strand, 1893160 - 1893239
Alignment:
| Q |
10 |
caaattgttatttccgctggcttaggtgttatgttccttggtgatactcttcatgttggaaggtatagtaaattcaattt |
89 |
Q |
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| T |
1893160 |
caaattgttatttctgttggcttaggagttatattccttggtgatattcttcatattggaaggtatggttaatttaattt |
1893239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 1881036 - 1881090
Alignment:
| Q |
36 |
tgttatgttccttggtgatactcttcatgttggaaggtatagtaaattcaatttt |
90 |
Q |
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| T |
1881036 |
tgttatattccttggtgatactcttcatgttggaaggtatggtttattcaatttt |
1881090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 1919207 - 1919239
Alignment:
| Q |
41 |
tgttccttggtgatactcttcatgttggaaggt |
73 |
Q |
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| T |
1919207 |
tgttccttggtgatactcttcatattggaaggt |
1919239 |
T |
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