View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_366 (Length: 230)
Name: NF9795A_low_366
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_366 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 17152513 - 17152742
Alignment:
| Q |
1 |
agacaaccttgaaggaatagaataccaactaatatgtacttccaatccaatacaacatacaataatttctacatttgccgatgtgaacataatcgcagct |
100 |
Q |
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| T |
17152513 |
agacaaccttgaaggaatagaataccaactaatatgtacttacaatccaatacaacatacaataatttctacatttgccgatgtgaacataatcgcagct |
17152612 |
T |
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| Q |
101 |
gcagcaactaattctaacaaaaatgctgcagacattgcttcctaaatttcatcagtaaaacttaaaagatgcttaaagtcattagctgtatacaccggcc |
200 |
Q |
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| T |
17152613 |
gcagcaactaattctaacaaaaatgctgcagacattgcttcctaaatttcatcagtaaaacttaaaagatgattaaagtcattagctgtatacaccggcc |
17152712 |
T |
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| Q |
201 |
aaaataatattctcagtaaaagattgttga |
230 |
Q |
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| T |
17152713 |
aaaataatattctcagcaaaagattgttga |
17152742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 28 - 209
Target Start/End: Complemental strand, 1823021 - 1822841
Alignment:
| Q |
28 |
actaatatgtacttccaatccaatacaacatacaataatttctacatttgccgatgtgaacataatcgcagctgcagcaactaattctaacaaaaatgct |
127 |
Q |
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| T |
1823021 |
actaatatgtacttgcaatccaatacaacatacaataatttctacatttaaac-tgtaaacataatcgcagctgcatcaactaattctaacaaaaatgtt |
1822923 |
T |
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| Q |
128 |
gcagacattgcttcctaaatttcatcagtaaaacttaaaagatgcttaaagtcattagctgtatacaccggccaaaataata |
209 |
Q |
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| T |
1822922 |
gcagacattgcttcctatatttcatcagtaaaattaaaaagatgattaaagtcattagttgtatacaccggccaaaataata |
1822841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 28 - 209
Target Start/End: Complemental strand, 1857466 - 1857286
Alignment:
| Q |
28 |
actaatatgtacttccaatccaatacaacatacaataatttctacatttgccgatgtgaacataatcgcagctgcagcaactaattctaacaaaaatgct |
127 |
Q |
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| T |
1857466 |
actaatatgtacttgcaatccaatacaacatacaataatttctacatttaaac-tgtaaacataatcgcagctgcatcaactaattctaacaaaaatgtt |
1857368 |
T |
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| Q |
128 |
gcagacattgcttcctaaatttcatcagtaaaacttaaaagatgcttaaagtcattagctgtatacaccggccaaaataata |
209 |
Q |
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| T |
1857367 |
gcagacattgcttcctatatttcatcagtaaaattaaaaagatgattaaagtcattagttgtatacaccggccaaaataata |
1857286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 137 - 206
Target Start/End: Complemental strand, 16674747 - 16674678
Alignment:
| Q |
137 |
gcttcctaaatttcatcagtaaaacttaaaagatgcttaaagtcattagctgtatacaccggccaaaata |
206 |
Q |
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| T |
16674747 |
gcttcctatatttcatcagtaaaactaaaaagatgattaaagtcattagctgaatacaccggccaaaata |
16674678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 137 - 206
Target Start/End: Complemental strand, 17649115 - 17649046
Alignment:
| Q |
137 |
gcttcctaaatttcatcagtaaaacttaaaagatgcttaaagtcattagctgtatacaccggccaaaata |
206 |
Q |
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| T |
17649115 |
gcttcctatatttcatcagtaaaactaaaaagatgattaaagtcattagctgaatacaccggccaaaata |
17649046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 28 - 111
Target Start/End: Complemental strand, 16681269 - 16681187
Alignment:
| Q |
28 |
actaatatgtacttccaatccaatacaacatacaataatttctacatttgccgatgtgaacataatcgcagctgcagcaactaa |
111 |
Q |
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| T |
16681269 |
actaatatgtacttacaatccaatacaacatacaataatttctacattt-acattctaaacataatcgcagctgcatcaactaa |
16681187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 28 - 111
Target Start/End: Complemental strand, 17655505 - 17655423
Alignment:
| Q |
28 |
actaatatgtacttccaatccaatacaacatacaataatttctacatttgccgatgtgaacataatcgcagctgcagcaactaa |
111 |
Q |
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| T |
17655505 |
actaatatgtacttacaatccaatacaacatacaataatttctacattt-acattctaaacataatcgcagctgcatcaactaa |
17655423 |
T |
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