View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9795A_low_367 (Length: 230)
Name: NF9795A_low_367
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_367 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 99 - 205
Target Start/End: Complemental strand, 30950412 - 30950306
Alignment:
| Q |
99 |
actatttataaacatggcctaacctgtcaactgattgctctggctgaaatcaattccaaaaataagtttgggagattcaatcacctgtaatcagatatta |
198 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30950412 |
actatttataaatatggcctaacctgtcaactgattgctctggctgaaatcaattccaaaaataagtttgggagattcaatcacctgtaatcagatatta |
30950313 |
T |
|
| Q |
199 |
taagtat |
205 |
Q |
| |
|
||||||| |
|
|
| T |
30950312 |
taagtat |
30950306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 11 - 107
Target Start/End: Original strand, 30950165 - 30950261
Alignment:
| Q |
11 |
attaattaattaattatttacctcgnnnnnnnagtgttgatattcatgtgacttggctgaaaagaatgttgctatttattttgccaagactatttat |
107 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30950165 |
attaattaattaattatttacctcgtttttttagtgttgatattcatgtgacttggctgaaaagaatgttgctatttattttgccaagattatttat |
30950261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 7472917 - 7472851
Alignment:
| Q |
112 |
atggcctaacctgtcaactgattgctctggctgaaatcaattccaaaaataagtttgggagattcaa |
178 |
Q |
| |
|
||||||||||||||| ||| |||||||| | ||||||| ||||||| |||||| |||| ||| |||| |
|
|
| T |
7472917 |
atggcctaacctgtccactcattgctcttggtgaaatcgattccaagaataagattggaagactcaa |
7472851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University