View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9795A_low_37 (Length: 415)

Name: NF9795A_low_37
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9795A_low_37
NF9795A_low_37
[»] chr3 (2 HSPs)
chr3 (179-408)||(49123942-49124171)
chr3 (21-186)||(49124225-49124390)
[»] chr4 (1 HSPs)
chr4 (238-345)||(4271421-4271528)
[»] chr1 (1 HSPs)
chr1 (238-345)||(2807765-2807872)
[»] chr6 (2 HSPs)
chr6 (37-85)||(11683218-11683266)
chr6 (26-85)||(18988416-18988475)
[»] chr8 (1 HSPs)
chr8 (26-85)||(30341290-30341349)
[»] chr5 (1 HSPs)
chr5 (26-85)||(23917049-23917108)


Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 179 - 408
Target Start/End: Complemental strand, 49124171 - 49123942
Alignment:
Q  179 ttatgaatattaaaatctatgttaacacacttaacatatttacattcttctttgatgaccagaggattagaatatctacatgagcattgttaccctcgag 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49124171 ttatgaatattaaaatctatgttaacacacttaacatatttacattcttctttgatgaccagaggattagaatatctacatgagcattgttaccctcgag 49124072  T
Q  279 tgattcatagagatatgaaatcttcaaatattcttttagatgcaaacttcaatgccaaggtaaaaaactgaatttactatatattttatcttcttccaca 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49124071 tgattcatagagatatgaaatcttcaaatattcttttagatgcaaacttcaatgccaaggtaaaaaactgaatttactatatattttatcttcttccaca 49123972  T
Q  379 aagtattttattcaccaaagtttcatatca 408  Q
    |||||||||||||||||||||||| |||||    
T  49123971 aagtattttattcaccaaagtttcttatca 49123942  T

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Target: chr3; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 21 - 186
Target Start/End: Complemental strand, 49124390 - 49124225
Alignment:
Q  21 cttggaatgtagttatggctttttcaatcacaacattaaccaagtatacaaaattcaaaattacaactgttaacaaattaatgaacaattccgattggag 120  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49124390 cttggaatgtagttaaggctttttcaatcacaacattaaccaagtatacaaaattcaaaattacaactgttaacaaattaatgaacaattccgattggag 49124291  T
Q  121 aagttatagatcgttttcattctgcatcttaaaagttttgtccccttaacaaagtttattatgaat 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49124290 aagttatagatcgttttcattctgcatcttaaaagttttgtccccttaacaaagtttattatgaat 49124225  T

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Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 238 - 345
Target Start/End: Original strand, 4271421 - 4271528
Alignment:
Q  238 cagaggattagaatatctacatgagcattgttaccctcgagtgattcatagagatatgaaatcttcaaatattcttttagatgcaaacttcaatgccaag 337  Q
    |||||| ||| ||||||| |||||||| || ||||||  |||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  4271421 cagaggtttaaaatatctgcatgagcactgctaccctgcagtgatccatagagatctgaaatcttctaatattcttttagatgcaaacttcaatgccaag 4271520  T
Q  338 gtaaaaaa 345  Q
    ||||||||    
T  4271521 gtaaaaaa 4271528  T

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Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 238 - 345
Target Start/End: Original strand, 2807765 - 2807872
Alignment:
Q  238 cagaggattagaatatctacatgagcattgttaccctcgagtgattcatagagatatgaaatcttcaaatattcttttagatgcaaacttcaatgccaag 337  Q
    |||||| ||| ||||||| |||||||| || ||||||  |||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  2807765 cagaggtttaaaatatctgcatgagcactgctaccctgcagtgatccatagagatctgaaatcttctaatattcttttagatgcaaacttcaatgccaag 2807864  T
Q  338 gtaaaaaa 345  Q
    ||||||||    
T  2807865 gtaaaaaa 2807872  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 11683266 - 11683218
Alignment:
Q  37 ggctttttcaatcacaacattaaccaagtatacaaaattcaaaattaca 85  Q
    |||| ||||||||||||| |||||| |||||||||||||||||||||||    
T  11683266 ggctatttcaatcacaactttaacctagtatacaaaattcaaaattaca 11683218  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 18988475 - 18988416
Alignment:
Q  26 aatgtagttatggctttttcaatcacaacattaaccaagtatacaaaattcaaaattaca 85  Q
    |||||||||| |||| ||||||| ||||| |||||||||| | |||| ||||||||||||    
T  18988475 aatgtagttaaggctatttcaattacaactttaaccaagtttgcaaagttcaaaattaca 18988416  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 30341290 - 30341349
Alignment:
Q  26 aatgtagttatggctttttcaatcacaacattaaccaagtatacaaaattcaaaattaca 85  Q
    |||||||||| |||| ||||||| ||||| |||||||||| |||||| ||||||||||||    
T  30341290 aatgtagttaaggctatttcaattacaactttaaccaagtttacaaagttcaaaattaca 30341349  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 23917049 - 23917108
Alignment:
Q  26 aatgtagttatggctttttcaatcacaacattaaccaagtatacaaaattcaaaattaca 85  Q
    |||||||||| |||| ||||||| ||||| |||||||||| | |||| ||||||||||||    
T  23917049 aatgtagttaaggctatttcaattacaactttaaccaagtttgcaaagttcaaaattaca 23917108  T

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