View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_372 (Length: 230)
Name: NF9795A_low_372
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_372 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 11745087 - 11744857
Alignment:
| Q |
1 |
aatagaattagaataggtag--tgtaaatgctaatgagtaatttgacatgattgtgcaataggaagtggtggatcagaaaaggaaccatcaagtattcta |
98 |
Q |
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| T |
11745087 |
aatagaattaaaataggcaggatgtaaatgctaatgagtaatttgacatgagtgtgcaataggaagtgatggatctgaaaaggaaccattaagtattcta |
11744988 |
T |
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| Q |
99 |
tttgcaatccattgatttgctgcttcagtgtagtgcactccatcccaactaatgtactttgaaggatcttcacaagaactagcaactatttctttaccat |
198 |
Q |
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| T |
11744987 |
tttgcaatccattgatttgctgcttcagtgtagtgcactccatcccaactaatgtactttgaaggatcttcacaagaactagcaactatttctttaccat |
11744888 |
T |
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| Q |
199 |
taatcgttgctttatttccacaataaacatg |
229 |
Q |
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||||| ||||||||||||||||||||||||| |
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| T |
11744887 |
taatcattgctttatttccacaataaacatg |
11744857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 23 - 229
Target Start/End: Complemental strand, 11738557 - 11738351
Alignment:
| Q |
23 |
taaatgctaatgagtaatttgacatgattgtgcaataggaagtggtggatcagaaaaggaaccatcaagtattctatttgcaatccattgatttgctgct |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
11738557 |
taaatgctaatgagtaatttgacatgattgtgcaataggaagtggtggatctgaaaaagaaccatcaagtattctatttgcaatccattgatttgctgct |
11738458 |
T |
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| Q |
123 |
tcagtgtagtgcactccatcccaactaatgtactttgaaggatcttcacaagaactagcaactatttctttaccattaatcgttgctttatttccacaat |
222 |
Q |
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| T |
11738457 |
tcagtgtagtgcactccatcccaactaatgtactttgaaggatcttcacaagaacttgtaacaatttctttaccattaatcgttgctttattcccacaat |
11738358 |
T |
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| Q |
223 |
aaacatg |
229 |
Q |
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||||||| |
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| T |
11738357 |
aaacatg |
11738351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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