View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_378 (Length: 229)
Name: NF9795A_low_378
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_378 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 14 - 217
Target Start/End: Complemental strand, 38224915 - 38224712
Alignment:
| Q |
14 |
gcaattgaaaaataatggatgctgaacacctcagaaattgtgtcagatcccactttcggtttagtggtgggtcctccctcaaatttatacacacgtatat |
113 |
Q |
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| T |
38224915 |
gcaattgaaaaataatggatgctgaacacctcagaaattgtgtcagatcccactttcggtttagtggtgggtcctccctcaaatttatacacacgtatat |
38224816 |
T |
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| Q |
114 |
aactataaatagaattttgctagccagaacaaattcatacttcagaggtgtaacaatttaccatattctaaggtccaggtattgtttcctttagtcttga |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
38224815 |
aactataaatagaattttgctagccagaacaaattcatacttcagaggtggaacaatttaccatagtctaaggtccaggtattgtttcctttagtcttga |
38224716 |
T |
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| Q |
214 |
tatt |
217 |
Q |
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|||| |
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| T |
38224715 |
tatt |
38224712 |
T |
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