View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_381 (Length: 229)
Name: NF9795A_low_381
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_381 |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 22 - 222
Target Start/End: Original strand, 1414312 - 1414512
Alignment:
| Q |
22 |
actttggtgtttcaacctgtatgtgacatgtaaatttattcaagtttcaagtgacaaatgtgtgtaccctgcaatttataactttggtgactcaaattca |
121 |
Q |
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| T |
1414312 |
actttggtgtttcaacctgtatgtgacatgtaaatttattcaagtttcaagtgacaaatgtgtgtaccctgcaatttataactttggtgactcaaattca |
1414411 |
T |
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| Q |
122 |
gatactggaactatatatgcaacatatacaagtgttcaacctcctaatggaataagcttctttggaaacatatcaggaagagcttctgatgtccatctca |
221 |
Q |
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| T |
1414412 |
gatactggaactatatatgcaacatatacaagtgttcaacctcctaatggaataagcttctttggaaacatatcaggaagagcttctgatggccgtctca |
1414511 |
T |
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| Q |
222 |
t |
222 |
Q |
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| T |
1414512 |
t |
1414512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 22 - 222
Target Start/End: Original strand, 1419861 - 1420058
Alignment:
| Q |
22 |
actttggtgtttcaacctgtatgtgacatgtaaatttattcaagtttcaagtgacaaatgtgtgtaccctgcaatttataactttggtgactcaaattca |
121 |
Q |
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| T |
1419861 |
actttggtgtttcaacctgtatgtgacatgtacatttattcaagtttcaagtcatgaatgtgtgtaccctgcaatttataactttggtgactcaaattca |
1419960 |
T |
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| Q |
122 |
gatactggaactatatatgcaacatatacaagtgttcaacctcctaatggaataagcttctttggaaacatatcaggaagagcttctgatgtccatctca |
221 |
Q |
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| T |
1419961 |
gatactggaactgcatatgcaactttcttatgtaatcaacctcctaatggcataag---ctttggaaacatatcagggagagcttctgatggccgtctca |
1420057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 76 - 222
Target Start/End: Original strand, 1410990 - 1411136
Alignment:
| Q |
76 |
caaatgtgtgtaccctgcaatttataactttggtgactcaaattcagatactggaactatatatgcaacatatacaagtgttcaacctcctaatggaata |
175 |
Q |
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| T |
1410990 |
caaatgtgtgtaccctgcaatttataactttggtgattcaaattcggataccggaactgtatatgcaacatttacaggtgttcaatctcctaacggaata |
1411089 |
T |
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| Q |
176 |
agcttctttggaaacatatcaggaagagcttctgatgtccatctcat |
222 |
Q |
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| T |
1411090 |
agcttctttggaaacatatcaggaagagcttctgatggccgtctcat |
1411136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 77 - 212
Target Start/End: Original strand, 1408109 - 1408244
Alignment:
| Q |
77 |
aaatgtgtgtaccctgcaatttataactttggtgactcaaattcagatactggaactatatatgcaacatatacaagtgttcaacctcctaatggaataa |
176 |
Q |
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||||||| ||||||||||||||| || ||||||||||||||||||||||||||| | | |||||| ||| ||| |||| ||||||||||| |||| |
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| T |
1408109 |
aaatgtgagtaccctgcaatttacaattttggtgactcaaattcagatactggagcagcaaatgcaatatacacagctgttacgcctcctaatggtataa |
1408208 |
T |
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| Q |
177 |
gcttctttggaaacatatcaggaagagcttctgatg |
212 |
Q |
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| T |
1408209 |
gctactttggaagcaccacaggaagagcttctgatg |
1408244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 1410912 - 1410965
Alignment:
| Q |
22 |
actttggtgtttcaacctgtatgtgacatgtaaatttattcaagtttcaagtga |
75 |
Q |
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| T |
1410912 |
actttggtgtttcaatctttatgtggcatgtacatttattcaagtctcaagtga |
1410965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 77 - 202
Target Start/End: Original strand, 3600507 - 3600632
Alignment:
| Q |
77 |
aaatgtgtgtaccctgcaatttataactttggtgactcaaattcagatactggaactatatatgcaacatatacaagtgttcaacctcctaatggaataa |
176 |
Q |
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|||||||| ||||| ||||| || |||||||||||||| ||||||||||||||| || |||||||||| || |||| | | ||||||||| |||| |
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| T |
3600507 |
aaatgtgtctacccagcaatatacaactttggtgactccaattcagatactggagctggatatgcaacaatggcagctgttgagcatcctaatggtataa |
3600606 |
T |
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| Q |
177 |
gcttctttggaaacatatcaggaaga |
202 |
Q |
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| T |
3600607 |
gcttctttggaagcatctcaggaaga |
3600632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 77 - 202
Target Start/End: Original strand, 14339374 - 14339499
Alignment:
| Q |
77 |
aaatgtgtgtaccctgcaatttataactttggtgactcaaattcagatactggaactatatatgcaacatatacaagtgttcaacctcctaatggaataa |
176 |
Q |
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| T |
14339374 |
aaatgtgtctacccagcaatatacaactttggtgactccaattcagatactggagctggatatgcaacaacggcagctgttgagtatcctaatggtataa |
14339473 |
T |
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| Q |
177 |
gcttctttggaaacatatcaggaaga |
202 |
Q |
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| T |
14339474 |
gcttctttggaagcatctcaggaaga |
14339499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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