View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_385 (Length: 229)
Name: NF9795A_low_385
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_385 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 35240821 - 35241033
Alignment:
| Q |
17 |
acatcatcttcactgacagaggcaatcatattcccagtgacatcccaacatatggaatttatgtctttgacgtgaccctattagggaacaagattcagac |
116 |
Q |
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| T |
35240821 |
acatcatcttcactgacagaggcaatcatattcccagtgacatcccaacatatggaatttatgtctttgacgtgaccctattagggaacaagattcagac |
35240920 |
T |
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| Q |
117 |
tcatactgtattaatactatatcatgatacacaactcaaattttaatcaattatatgtcatacgtgaacctcaccttaagaatgttcttaacgtcgaaag |
216 |
Q |
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| T |
35240921 |
tcatactgtattaatactatatcatgatacacaactcaaattttaatcaattatatgtcatacgtgaacctcaccttaagaatgttcttaacgtcgaaag |
35241020 |
T |
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| Q |
217 |
acggaaattcaag |
229 |
Q |
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| T |
35241021 |
acggaaattcaag |
35241033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 21 - 166
Target Start/End: Original strand, 35286651 - 35286796
Alignment:
| Q |
21 |
catcttcactgacagaggcaatcatattcccagtgacatcccaacatatggaatttatgtctttgacgtgaccctattagggaacaagattcagactcat |
120 |
Q |
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| T |
35286651 |
catctgcactgacagaggcgatcatttgcccagtgacatcccaacataaggaacaaatatatttgacgtggccctaatagggaatgagattcagactcat |
35286750 |
T |
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| Q |
121 |
actgtattaatactatatcatgatacacaactcaaattttaatcaa |
166 |
Q |
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| T |
35286751 |
gctgtagtaatactatttcatgatacacaacttacattttaatcaa |
35286796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 35253075 - 35253151
Alignment:
| Q |
20 |
tcatcttcactgacagaggcaatcatattcccagtgacatcccaacatatggaatttatgtctttgacgtgacccta |
96 |
Q |
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| T |
35253075 |
tcatcttcactgacagaggcaatcatattcccagtgacgtccaaacatatggaattgatgtctttgacgtgtcccta |
35253151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 35270940 - 35271019
Alignment:
| Q |
17 |
acatcatcttcactgacagaggcaatcatattcccagtgacatcccaacatatggaatttatgtctttgacgtgacccta |
96 |
Q |
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| T |
35270940 |
acatcatcttcactgacagaggcaatcatattcccagtggcatcccaacatatagacttaatttctttgacgtgtcccta |
35271019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 35246456 - 35246554
Alignment:
| Q |
17 |
acatcatcttcactgacagaggcaatcatattcccagtgacatcccaacatatggaatttatgtctttgacgtgaccctattagggaacaagattcaga |
115 |
Q |
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| T |
35246456 |
acatcatcttcagtgacagaggcaatcattttaccagtgacatcccaacacatggaatagatgtctttggtgtgtccctaatagggaacgagattcaga |
35246554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 172
Target Start/End: Original strand, 35283118 - 35283268
Alignment:
| Q |
22 |
atcttcactgacagaggcaatcatattcccagtgacatcccaacatatggaatttatgtctttgacgtgaccctattagggaacaagattcagactcata |
121 |
Q |
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|||||||||||||||||| || | | || ||||||||||||||||| |||| || | |||||| ||||||| ||| ||| ||||| || ||||| |
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| T |
35283118 |
atcttcactgacagaggcgattgtttgcctagtgacatcccaacataaggaacaaatatttttgacatgaccctgatagagaatgagattaaggctcatg |
35283217 |
T |
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| Q |
122 |
ctgtattaatactatatcatgatacacaactcaaattttaatcaattatat |
172 |
Q |
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| || || |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35283218 |
ttttagtagtactatatcatgatacacaactcacattttaatcaattatat |
35283268 |
T |
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