View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_388 (Length: 229)
Name: NF9795A_low_388
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_388 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 46899150 - 46898922
Alignment:
| Q |
1 |
accatacccaaaagactttggagaaccaatatttccaacgcttattgcagaatactctcttgttttccaagaatcatccctaaacctagcaggatcctca |
100 |
Q |
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| T |
46899150 |
accatacccaaaagactttggagaaccaatatttccaacgcttattgcagaacactctcttgttttccaagaagcatccctaaacctagcaggatcctca |
46899051 |
T |
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| Q |
101 |
tgaagaaagctacacttatcaccataaggacattcctcgccattgtaatacttcttacacagcttcatcttgtgaatgattttttgatcttcatcccaat |
200 |
Q |
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| T |
46899050 |
tgaagaaagctacacttatcaccataaggacattcctcaccaatgtaatacttcttacacagcttcatcttgtgaatgattttttgatcttcatcccaat |
46898951 |
T |
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| Q |
201 |
ttggtggttgctgccttgtctccacctga |
229 |
Q |
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| T |
46898950 |
ttggtggttgctgccttgtctccacctga |
46898922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 202
Target Start/End: Complemental strand, 46864033 - 46863833
Alignment:
| Q |
2 |
ccatacccaaaagactttggagaaccaatatttccaacgcttattgcagaatactctcttgttttccaagaatcatccctaaacctagcaggatcctcat |
101 |
Q |
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| T |
46864033 |
ccatccccaaatgattttgaagaaccaatagtcccaatgcttatagaagaacactctcctgacttccaagaatgatccctagacttagcaggatcctcat |
46863934 |
T |
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| Q |
102 |
gaagaaagctacacttatcaccataaggacattcctcgccattgtaatacttcttacacagcttcatcttgtgaatgattttttgatcttcatcccaatt |
201 |
Q |
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| T |
46863933 |
gacgaaaattacacttactaccaaagaaacatttctcaccattggaatacatcctgcatagcttcatcttgtgaatgaatttttgatcttcctcccaatt |
46863834 |
T |
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| Q |
202 |
t |
202 |
Q |
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| T |
46863833 |
t |
46863833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 191
Target Start/End: Complemental strand, 46890509 - 46890389
Alignment:
| Q |
71 |
gaatcatccctaaacctagcaggatcctcatgaagaaagctacacttatcaccataaggacattcctcgccattgtaatacttcttacacagcttcatct |
170 |
Q |
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| T |
46890509 |
gaatcatccctaaactgtgcaggatcttcatgaaggaatatacagttatctccatatggacattcctccccattgcaataattcttgcacagtttcattg |
46890410 |
T |
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| Q |
171 |
tgtgaatgattttttgatctt |
191 |
Q |
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| T |
46890409 |
tttgtatgatttttttatctt |
46890389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 100 - 196
Target Start/End: Original strand, 22691886 - 22691982
Alignment:
| Q |
100 |
atgaagaaagctacacttatcaccataaggacattcctcgccattgtaatacttcttacacagcttcatcttgtgaatgattttttgatcttcatcc |
196 |
Q |
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| T |
22691886 |
atgaagaaaactacacttatcatcataaggacattctttaccattgtagtatttcttgcatagccccatcttgtgaatgattttttgatcatcatcc |
22691982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 196
Target Start/End: Complemental strand, 19845907 - 19845811
Alignment:
| Q |
100 |
atgaagaaagctacacttatcaccataaggacattcctcgccattgtaatacttcttacacagcttcatcttgtgaatgattttttgatcttcatcc |
196 |
Q |
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| T |
19845907 |
atgaagaaaaatacatgtatcaccataaggacattcctcaccattgtagtatttcttgcatagccccatcttgtgaatgattttctcatcatcatcc |
19845811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 138
Target Start/End: Complemental strand, 9150885 - 9150761
Alignment:
| Q |
14 |
gactttggagaaccaatatttccaacgcttattgcagaatactctcttgttttccaagaatcatccctaaacctagcaggatcctcatgaagaaagctac |
113 |
Q |
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| T |
9150885 |
gactttggagaaccaataatttcgatgtttattgcagaacaatctcttaatttcttaaaattatccctaaacctagaagggccctcattaagaaggctac |
9150786 |
T |
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| Q |
114 |
acttatcaccataaggacattcctc |
138 |
Q |
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| T |
9150785 |
atttctcaccatagggatattcctc |
9150761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 222
Target Start/End: Complemental strand, 9150464 - 9150390
Alignment:
| Q |
148 |
atacttcttacacagcttcatcttgtgaatgattttttgatcttcatcccaatttggtggttgctgccttgtctc |
222 |
Q |
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||||||||| |||| |||||||||| |||| ||||| | || | ||||||||||| ||||| |||||||| |||| |
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| T |
9150464 |
atacttcttgcacaacttcatcttgagaataattttctaatttccatcccaatttcgtggtggctgccttatctc |
9150390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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